RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 OR4D2P58180 307 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB8AP61006 207 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CXCR4P61073 352 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LSM6P62312 80 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL32P62910 135 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAFAH1B2P68402 229 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SRPXP78539 464 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYCSP99999 105 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TFAMQ00059 246 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DHODHQ02127 395 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SEMG2Q02383 582 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SP4Q02446 784 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TGFBR3Q03167 851 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD164Q04900 197 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRKCDQ05655 676 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PUDPQ08623 228 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C2orf54Q08AI8 447 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TWF1Q12792 350 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDC20Q12834 499 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 STX4Q12846 297 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ELAVL2Q12926 359 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MLLT11Q13015 90 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SRSF6Q13247 344 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DYNC1I2Q13409 638 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC39A6Q13433 755 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IL18R1Q13478 541 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KRR1Q13601 381 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB31Q13636 194 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIAA0141Q14154 515 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GGTLC2Q14390 218 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 POU6F1Q14863 301 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DS1Q14954 304 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPNMBQ14956 572 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 P2RY6Q15077 328 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NECTIN1Q15223 517 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 QPRTQ15274 297 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FCN2Q15485 313 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TGIF1Q15583 401 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR7A5Q15622 319 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAM1Q15629 374 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRIP13Q15645 432 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MLF2Q15773 248 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TOMM34Q15785 309 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP6AP1Q15904 470 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAPK14Q16539 360 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SGCAQ16586 387 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MOGQ16653 247 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HIST3H3Q16695 136 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MICAQ29983 383 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLEC12BQ2HXU8 276 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TBC1D28Q2M2D7 210 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CNPY1Q3B7I2 92 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NSUN5P1Q3KNT7 163 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC25A35Q3KQZ1 300 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIAA1644Q3SXP7 199 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CHRFAM7AQ494W8 412 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZFP69Q49AA0 526 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM52BQ4KMG9 183 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF658BQ4V348 819 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPIN4Q56A73 249 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 YIF1BQ5BJH7 314 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KLF17Q5JT82 389 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACER2Q5QJU3 275 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 VAX1Q5SQQ9 334 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TIMM23BQ5SRD1 257 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MUC21Q5SSG8 566 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCNJQ5T5M9 372 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 AVPI1Q5T686 147 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TPTE2P1Q5T6R2 138 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM27D1Q5T7N8 215 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SYT6Q5T7P8 510 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CPTPQ5TA50 214 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANKRD22Q5VYY1 191 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 METTL21CQ5VZV1 264 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM219BQ5XKK7 198 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF57Q68EA5 555 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HBMQ6B0K9 141 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5M10Q6IEU7 315 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C11orf71Q6IPW1 123 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF544Q6NX49 715 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C3orf33Q6P1S2 294 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MED27Q6P2C8 311 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM199XQ6PEV8 388 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LCLAT1Q6UWP7 414 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM131AQ6UXB0 335 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RBMS3Q6XE24 437 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ADAMTSL5Q6ZMM2 481 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MBOAT1Q6ZNC8 495 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DNM1P46Q6ZS02 220 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 Q6ZSR9 355 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 Q6ZT83 130 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM179Q6ZVK1 233 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MBOAT2Q6ZWT7 520 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 H2AFVQ71UI9 128 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PGAP1Q75T13 922 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ASCL5Q7RTU5 278 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRSS41Q7RTY9 318 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC36A1Q7Z2H8 476 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM19A5Q7Z5A7 132 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM19A1Q7Z5A9 133 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms