RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 FANCMQ8IYD8 2048 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HELZP42694 1942 aaKnown RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CACNA1DQ01668 2161 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TEX13DA0A0J9YY54 714 aaPredicted RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RFPL4AA6NLU0 287 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RFPL4AL1F8VTS6 287 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SULT2B1O00204 365 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 BCL2L11O43521 198 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EPPINO95925 133 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MT-ND4LP03901 98 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR8U9P0C7N5 309 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CT45A8P0DMV1 189 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CT45A9P0DMV2 189 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TAS2R19P59542 299 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SPOCK1Q08629 439 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 COTL1Q14019 142 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CT45A2Q5DJT8 189 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LCN10Q6JVE6 187 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RHOUQ7L0Q8 258 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PXKQ7Z7A4 578 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 VASH2Q86V25 355 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF283Q8N7M2 679 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SNIP1Q8TAD8 396 aaKnown RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DERL3Q96Q80 235 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 STACQ99469 402 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RHOFQ9HBH0 211 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SPACA1Q9HBV2 294 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CA10Q9NS85 328 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A6NCN8 305 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NUDT19A8MXV4 375 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 M0QYG6 137 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 AP4M1O00189 453 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NDUFA2O43678 99 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 IL5P05113 134 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 H2BFMP0C1H6 154 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF43P17038 809 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RBMXP38159 391 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PLA2G7Q13093 441 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RAB11BQ15907 218 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SOHLH1Q5JUK2 328 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CYB5R2Q6BCY4 276 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 YRDCQ86U90 279 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LDLRAD3Q86YD5 345 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FAM24BQ8N5W8 94 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FAM181AQ8N9Y4 354 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PNLDC1Q8NA58 520 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR5D18Q8NGL1 313 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NAT6Q93015 286 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SCGB3A2Q96PL1 93 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ELOVL3Q9HB03 270 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 INPP5EQ9NRR6 644 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OPN4Q9UHM6 478 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NOSIPQ9Y314 301 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 WIF1Q9Y5W5 379 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CFAP54Q96N23 3096 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MPTX1A8MV57 137 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NUDT21O43809 227 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ATF1P18846 271 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NFYBP25208 207 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FASLGP48023 281 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 IDH3GP51553 393 aaPredicted RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SIRPAP78324 504 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FMODQ06828 376 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TMEM201Q5SNT2 666 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HIST2H3PS2Q5TEC6 136 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR10G3Q8NGC4 313 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR5L2Q8NGL0 311 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR6K3Q8NGY3 331 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZPLD1Q8TCW7 415 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CNTNAP3Q9BZ76 1288 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 POFUT1Q9H488 388 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TUBG2Q9NRH3 451 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MED17Q9NVC6 651 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DNAJB12Q9NXW2 375 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 IGHV3-64DA0A0J9YX35 117 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ARRDC5A6NEK1 342 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TMEM229AB2RXF0 380 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DCTN6O00399 190 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZFAND5O76080 213 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HLA-DQB1P01920 261 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EPXP11678 715 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CDK2P24941 298 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 C21orf58P58505 322 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RAB4BP61018 213 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RPS15P62841 145 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 VAMP2P63027 116 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF117Q03924 483 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PRTGQ2VWP7 1150 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RFLNBQ8N5W9 214 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF383Q8NA42 475 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR5AK2Q8NH90 309 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PPP1R1CQ8WVI7 109 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ISOC2Q96AB3 205 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 INTS12Q96CB8 462 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 AKR1E2Q96JD6 320 aa9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TP53BP1Q12888 1972 aaPredicted RBP9.68□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TP53I11O14683 189 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NKX2-2O95096 273 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR2C1O95371 312 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CHATP28329 748 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms