RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 IGHV3-43DP0DP04 118 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 GFAPP14136 432 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 SYT1P21579 422 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CRATP43155 626 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 C2orf80Q0P641 193 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 DGCR6Q14129 220 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 PON3Q15166 354 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 C15orf32Q32M92 178 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 COA6Q5JTJ3 125 aaKnown RBP3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CPTPQ5TA50 214 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CLEC6AQ6EIG7 209 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 FAHD1Q6P587 224 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 KRTAP7-1Q8IUC3 87 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CDKL3Q8IVW4 592 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-212ENST00000493341 NELFCDQ8IXH7 590 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CDRT4Q8N9R6 151 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 OR7G1Q8NGA0 311 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 NAF1Q96HR8 494 aaKnown RBP3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CIB1Q99828 191 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 TIMM29Q9BSF4 260 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 RMND1Q9NWS8 449 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 TRMT112Q9UI30 125 aaKnown RBP3.41□□□□□ -1.86
VPS13A-212ENST00000493341 NEUROG3Q9Y4Z2 214 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 ATP6V1DQ9Y5K8 247 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 WDR7Q9Y4E6 1490 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 ANKRD20A5PA0PJZ0 165 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 A6NDN8 102 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 hCG_2039718K7EN88 272 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CDC40O60508 579 aaKnown RBP eCLIP3.41□□□□□ -1.86
VPS13A-212ENST00000493341 SCN2BO60939 215 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 LDOC1O95751 146 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-212ENST00000493341 FADS2O95864 444 aaKnown RBP3.41□□□□□ -1.86
VPS13A-212ENST00000493341 MOSP00540 346 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 RETP07949 1114 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 ZNF3P17036 446 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 ARL2P36404 184 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 HCCSP53701 268 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 ST3GAL4Q11206 333 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 MRGPRG-AS1Q2M3A8 158 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CASC10Q5T4H9 136 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 ZNF691Q5VV52 312 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 OR2T5Q6IEZ7 315 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 TRMT10CQ7L0Y3 403 aaKnown RBP3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CD177Q8N6Q3 437 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 C14orf178Q8N769 122 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-212ENST00000493341 OR10G9Q8NGN4 311 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 OR2T29Q8NH02 315 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 ZFP90Q8TF47 636 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 RNF145Q96MT1 663 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 ZNF681Q96N22 645 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 PLEKHF1Q96S99 279 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 GABRG3Q99928 467 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 NRIP2Q9BQI9 281 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 FBXO8Q9NRD0 319 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 PCYOX1Q9UHG3 505 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 CES1P1Q9UKY3 287 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 MAGI3Q5TCQ9 1506 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 NFASCO94856 1347 aa3.4□□□□□ -1.86
VPS13A-212ENST00000493341 TEX14Q8IWB6 1497 aa3.4□□□□□ -1.86
VPS13A-212ENST00000493341 KLF18A0A0U1RQI7 1052 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 ZFP92A6NM28 416 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 SMLR1H3BR10 107 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 H7C417 338 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 ALOX12BO75342 701 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 RAB3DO95716 219 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 FABP3P05413 133 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 ATF6P18850 670 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 RAB3BP20337 219 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 UGT2B10P36537 528 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 CEACAM6P40199 344 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 DNASE1L1P49184 302 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 VSNL1P62760 191 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 QPRTQ15274 297 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 FRMPD2BQ6IN97 320 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 BAIAP2L2Q6UXY1 529 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 ZNF493Q6ZR52 646 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 SSX6Q7RTT6 188 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 OR10AD1Q8NGE0 317 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 ZNF75AQ96N20 296 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 EDA2RQ9HAV5 297 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 SDHAF2Q9NX18 166 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 SLC25A37Q9NYZ2 338 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 MTFP1Q9UDX5 166 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 UBIAD1Q9Y5Z9 338 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 URGCP-MRPS24S4R325 110 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 DENND4AQ7Z401 1863 aa3.4□□□□□ -1.87
VPS13A-212ENST00000493341 A0A0A6YYD5 115 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 B4GALT5O43286 388 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 CBR3O75828 277 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 LIPCP11150 499 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 FUT3P21217 361 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 WARSP23381 471 aaKnown RBP3.39□□□□□ -1.87
VPS13A-212ENST00000493341 PRLHRP49683 370 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 UBE2E1P51965 193 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 SMARCB1Q12824 385 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 DYNC1I2Q13409 638 aaKnown RBP3.39□□□□□ -1.87
VPS13A-212ENST00000493341 CCDC122Q5T0U0 273 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 GFI1BQ5VTD9 330 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 DNAJC24Q6P3W2 148 aa3.39□□□□□ -1.87
VPS13A-212ENST00000493341 STRADAQ7RTN6 431 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms