RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ZFPL1O95159 310 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 PNPP00491 289 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 CD2P06729 351 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 CCL1P22362 96 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 CRYBB2P43320 205 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 GTF2A1P52655 376 aaPredicted RBP8.84□□□□□ -0.99
USP39-215ENST00000481409 ZNF121P58317 390 aaPredicted RBP8.84□□□□□ -0.99
USP39-215ENST00000481409 NANOS3P60323 173 aaKnown RBP8.84□□□□□ -0.99
USP39-215ENST00000481409 TUBA1BP68363 451 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 ADORA2A-AS1P86434 159 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 GALK2Q01415 458 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 SLC3A1Q07837 685 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 PPA1Q15181 289 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 RSPO1Q2MKA7 263 aaPredicted RBP8.84□□□□□ -0.99
USP39-215ENST00000481409 Q499Y3 187 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 UNQ9370/PRO34162Q6UXP9 181 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 Q6ZSR3 168 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 TUBA1AQ71U36 451 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 SPATC1Q76KD6 591 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 DOK3Q7L591 496 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 MDP1Q86V88 176 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 FJX1Q86VR8 437 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 LIX1LQ8IVB5 337 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 ZNF843Q8N446 348 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 CPEB3Q8NE35 698 aaKnown RBP8.84□□□□□ -0.99
USP39-215ENST00000481409 SLC30A7Q8NEW0 376 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 AKR7LQ8NHP1 331 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 FGFBP3Q8TAT2 258 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 ABHD4Q8TB40 342 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 PRR7Q8TB68 274 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 AKAP1Q92667 903 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP39-215ENST00000481409 HTRA1Q92743 480 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 APOBEC3DQ96AK3 386 aaPredicted RBP8.84□□□□□ -0.99
USP39-215ENST00000481409 ISOC1Q96CN7 298 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 ACTR6Q9GZN1 396 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 KCNJ16Q9NPI9 418 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 EIF3KQ9UBQ5 218 aaKnown RBP8.84□□□□□ -0.99
USP39-215ENST00000481409 SLC22A13Q9Y226 551 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 GRIP1Q9Y3R0 1128 aa8.84□□□□□ -0.99
USP39-215ENST00000481409 SIRT4Q9Y6E7 314 aaPredicted RBP8.84□□□□□ -0.99
USP39-215ENST00000481409 TRBV5-5A0A0J9YX44 114 aa8.83□□□□□ -1
USP39-215ENST00000481409 A0A1B0GVI7 797 aa8.83□□□□□ -1
USP39-215ENST00000481409 CCDC160A6NGH7 325 aa8.83□□□□□ -1
USP39-215ENST00000481409 TRIM64BA6NI03 449 aa8.83□□□□□ -1
USP39-215ENST00000481409 H3BSA7 217 aa8.83□□□□□ -1
USP39-215ENST00000481409 GABRPO00591 440 aa8.83□□□□□ -1
USP39-215ENST00000481409 IGLV3-1P01715 115 aa8.83□□□□□ -1
USP39-215ENST00000481409 TTRP02766 147 aa8.83□□□□□ -1
USP39-215ENST00000481409 ANXA2P07355 339 aaKnown RBP8.83□□□□□ -1
USP39-215ENST00000481409 EPXP11678 715 aa8.83□□□□□ -1
USP39-215ENST00000481409 GNLYP22749 145 aa8.83□□□□□ -1
USP39-215ENST00000481409 GADD45AP24522 165 aa8.83□□□□□ -1
USP39-215ENST00000481409 PSMB10P40306 273 aa8.83□□□□□ -1
USP39-215ENST00000481409 KIR3DL2P43630 455 aa8.83□□□□□ -1
USP39-215ENST00000481409 SLC6A9P48067 706 aa8.83□□□□□ -1
USP39-215ENST00000481409 PRKXP51817 358 aa8.83□□□□□ -1
USP39-215ENST00000481409 FAM27E3Q08E93 113 aa8.83□□□□□ -1
USP39-215ENST00000481409 MALLQ13021 153 aa8.83□□□□□ -1
USP39-215ENST00000481409 CTF1Q16619 201 aa8.83□□□□□ -1
USP39-215ENST00000481409 SOWAHCQ53LP3 525 aaPredicted RBP8.83□□□□□ -1
USP39-215ENST00000481409 ZBTB37Q5TC79 503 aa8.83□□□□□ -1
USP39-215ENST00000481409 OTPQ5XKR4 325 aa8.83□□□□□ -1
USP39-215ENST00000481409 SEZ6L2Q6UXD5 910 aa8.83□□□□□ -1
USP39-215ENST00000481409 SLC16A12Q6ZSM3 486 aa8.83□□□□□ -1
USP39-215ENST00000481409 USP43Q70EL4 1123 aa8.83□□□□□ -1
USP39-215ENST00000481409 TPRA1Q86W33 373 aa8.83□□□□□ -1
USP39-215ENST00000481409 ZNF584Q8IVC4 421 aa8.83□□□□□ -1
USP39-215ENST00000481409 CROCCP3Q8IVE0 287 aa8.83□□□□□ -1
USP39-215ENST00000481409 PRSS35Q8N3Z0 413 aa8.83□□□□□ -1
USP39-215ENST00000481409 KBTBD8Q8NFY9 601 aa8.83□□□□□ -1
USP39-215ENST00000481409 SPSB4Q96A44 273 aa8.83□□□□□ -1
USP39-215ENST00000481409 S100PBPQ96BU1 408 aa8.83□□□□□ -1
USP39-215ENST00000481409 POM121Q96HA1 1249 aa8.83□□□□□ -1
USP39-215ENST00000481409 PGAM5Q96HS1 289 aa8.83□□□□□ -1
USP39-215ENST00000481409 KCTD7Q96MP8 289 aa8.83□□□□□ -1
USP39-215ENST00000481409 PDCD1LG2Q9BQ51 273 aa8.83□□□□□ -1
USP39-215ENST00000481409 MED18Q9BUE0 208 aa8.83□□□□□ -1
USP39-215ENST00000481409 CDH20Q9HBT6 801 aa8.83□□□□□ -1
USP39-215ENST00000481409 NDRG3Q9UGV2 375 aa8.83□□□□□ -1
USP39-215ENST00000481409 SPEF1Q9Y4P9 236 aa8.83□□□□□ -1
USP39-215ENST00000481409 ITPR1Q14643 2758 aa8.83□□□□□ -1
USP39-215ENST00000481409 CACNA1CQ13936 2221 aa8.82□□□□□ -1
USP39-215ENST00000481409 TRAV1-2A0A0B4J238 106 aa8.82□□□□□ -1
USP39-215ENST00000481409 C5orf49A4QMS7 147 aa8.82□□□□□ -1
USP39-215ENST00000481409 ZNF503-AS2A6NEH8 195 aa8.82□□□□□ -1
USP39-215ENST00000481409 GPX5O75715 221 aa8.82□□□□□ -1
USP39-215ENST00000481409 CLDN14O95500 239 aa8.82□□□□□ -1
USP39-215ENST00000481409 LCATP04180 440 aa8.82□□□□□ -1
USP39-215ENST00000481409 UCHL1P09936 223 aa8.82□□□□□ -1
USP39-215ENST00000481409 PATE4P0C8F1 98 aa8.82□□□□□ -1
USP39-215ENST00000481409 OCM2P0CE71 109 aa8.82□□□□□ -1
USP39-215ENST00000481409 MYL9P24844 172 aa8.82□□□□□ -1
USP39-215ENST00000481409 PTAFRP25105 342 aa8.82□□□□□ -1
USP39-215ENST00000481409 APEX1P27695 318 aaKnown RBP8.82□□□□□ -1
USP39-215ENST00000481409 RAD52P43351 418 aa8.82□□□□□ -1
USP39-215ENST00000481409 PSMD7P51665 324 aa8.82□□□□□ -1
USP39-215ENST00000481409 RPS11P62280 158 aaKnown RBP eCLIP8.82□□□□□ -1
USP39-215ENST00000481409 RPS25P62851 125 aaKnown RBP8.82□□□□□ -1
USP39-215ENST00000481409 FABP5Q01469 135 aa8.82□□□□□ -1
USP39-215ENST00000481409 MFGE8Q08431 387 aaPredicted RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms