RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 MXRA7P84157 204 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 TSPAN31Q12999 210 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 FHL1Q13642 323 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 TAF13Q15543 124 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 HIST2H3PS2Q5TEC6 136 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 HIST2H3AQ71DI3 136 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 PGAP1Q75T13 922 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 DOK3Q7L591 496 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 MRPL21Q7Z2W9 205 aaKnown RBP6.55□□□□□ -1.36
CD44-211ENST00000442151 FANK1Q8TC84 345 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 SLC25A28Q96A46 364 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 MEGF10Q96KG7 1140 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 C7orf34Q96L11 122 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 ATF6BQ99941 703 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 SLC30A2Q9BRI3 323 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 SSBP3Q9BWW4 388 aaPredicted RBP6.55□□□□□ -1.36
CD44-211ENST00000442151 C1QTNF5Q9BXJ0 243 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 MYLK2Q9H1R3 596 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 OR52D1Q9H346 318 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 FN3KRPQ9HA64 309 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 IL1RAPQ9NPH3 570 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 CD300AQ9UGN4 299 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 PPIAL4AQ9Y536 164 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 CUBNO60494 3623 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 F5H0A9 414 aaPredicted RBP6.55□□□□□ -1.36
CD44-211ENST00000442151 RER1O15258 196 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 GMDSO60547 372 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 PPP1R3DO95685 299 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 WNT2P09544 360 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 RPS2P15880 293 aaKnown RBP6.55□□□□□ -1.36
CD44-211ENST00000442151 CFL1P23528 166 aaKnown RBP6.55□□□□□ -1.36
CD44-211ENST00000442151 GGT2P36268 569 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 CDKN2AP42771 156 aaKnown RBP6.55□□□□□ -1.36
CD44-211ENST00000442151 SLC15A1P46059 708 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 OR2T2Q6IF00 324 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 DRAM2Q6UX65 266 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 ZBTB46Q86UZ6 589 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 FAM86B1Q8N7N1 296 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 OR52E2Q8NGJ4 325 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 OR52J3Q8NH60 311 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 RAB40AQ8WXH6 277 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 GTF3AQ92664 365 aaKnown RBP6.55□□□□□ -1.36
CD44-211ENST00000442151 ITFG2Q969R8 447 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 GCM1Q9NP62 436 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 C14orf119Q9NWQ9 140 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 ERVK-18Q9QC07 812 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 TAGLN3Q9UI15 199 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 ARL2BPQ9Y2Y0 163 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 CACNG2Q9Y698 323 aa6.55□□□□□ -1.36
CD44-211ENST00000442151 A0A1B0GUS0 222 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 GGT3PA6NGU5 568 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 F5H5K5 113 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 SCG5P05408 212 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 FMO3P31513 532 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 CD200P41217 278 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 HMGA2P52926 109 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 PAX8Q06710 450 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 TRAP1Q12931 704 aaKnown RBP6.54□□□□□ -1.36
CD44-211ENST00000442151 BAMBIQ13145 260 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 OR8G1Q15617 311 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 SHISA2Q6UWI4 295 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 DCDC5Q6ZRR9 648 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 COLCA1Q6ZS62 124 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 ZDHHC21Q8IVQ6 265 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 OR5AS1Q8N127 324 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 OR4K13Q8NH42 304 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 CDRT15Q96T59 188 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 SLC6A7Q99884 636 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 TEX12Q9BXU0 123 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 TRIM15Q9C019 465 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 TOR3AQ9H497 397 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 CLN8Q9UBY8 286 aa6.54□□□□□ -1.36
CD44-211ENST00000442151 IGLV1-36A0A0B4J1U3 117 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 TRAV38-1A0A0B4J264 116 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 TRBV4-1A0A0J9YWV2 114 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 CLDN34H7C241 214 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 TNFRSF11BO00300 401 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 XRCC2O43543 280 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 ENSAO43768 121 aaKnown RBP6.53□□□□□ -1.36
CD44-211ENST00000442151 SNX3O60493 162 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 ECDO95905 644 aaPredicted RBP6.53□□□□□ -1.36
CD44-211ENST00000442151 FSHBP01225 129 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 CRYBA1P05813 215 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 ACSM4P0C7M7 580 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 HKR1P10072 659 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 HIST1H1CP16403 213 aaKnown RBP6.53□□□□□ -1.36
CD44-211ENST00000442151 PRTN3P24158 256 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 GSSP48637 474 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 UBA52P62987 128 aaKnown RBP6.53□□□□□ -1.36
CD44-211ENST00000442151 GRB2P62993 217 aaKnown RBP6.53□□□□□ -1.36
CD44-211ENST00000442151 IL13RA1P78552 427 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 SRSF2Q01130 221 aaKnown RBP6.53□□□□□ -1.36
CD44-211ENST00000442151 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.53□□□□□ -1.36
CD44-211ENST00000442151 ZMYND11Q15326 602 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 SLC18B1Q6NT16 456 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 Q6ZR03 302 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 PTCHD4Q6ZW05 846 aa6.53□□□□□ -1.36
CD44-211ENST00000442151 TSEN54Q7Z6J9 526 aaKnown RBP6.53□□□□□ -1.36
CD44-211ENST00000442151 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.53□□□□□ -1.36
CD44-211ENST00000442151 OR6V1Q8N148 313 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms