RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 LMX1BO60663 402 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 CST4P01036 141 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 HLA-DQA2P01906 255 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 ARG1P05089 322 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 HOXB5P09067 269 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 CT45A8P0DMV1 189 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 CT45A9P0DMV2 189 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 GNB3P16520 340 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 HOXA5P20719 270 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 DNASE1L1P49184 302 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 SULT1A1P50225 295 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 ARF3P61204 181 aaPredicted RBP9.56□□□□□ -0.88
USP54-204ENST00000422491 DEFA6Q01524 100 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 CCINQ13939 588 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 CT45A2Q5DJT8 189 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 MAMDC2Q7Z304 686 aaPredicted RBP9.56□□□□□ -0.88
USP54-204ENST00000422491 NKAIN3Q8N8D7 197 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 OR13C3Q8NGS6 347 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 GTF3AQ92664 365 aaKnown RBP9.56□□□□□ -0.88
USP54-204ENST00000422491 SLC22A18Q96BI1 424 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 MAP3K3Q99759 626 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 SRMSQ9H3Y6 488 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 OPA3Q9H6K4 179 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 TBC1D29Q9UFV1 150 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 SERGEFQ9UGK8 458 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 HHLA2Q9UM44 414 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 LRP12Q9Y561 859 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 M0R036 132 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 OIP5O43482 229 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 SPARCP09486 303 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 PET100P0DJ07 73 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 NME1P15531 152 aaKnown RBP9.55□□□□□ -0.88
USP54-204ENST00000422491 SNCAP37840 140 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 RIDAP52758 137 aaKnown RBP9.55□□□□□ -0.88
USP54-204ENST00000422491 UCP2P55851 309 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 DEFB103AP81534 67 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 CDPF1Q6NVV7 123 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 FIGLAQ6QHK4 219 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.55□□□□□ -0.88
USP54-204ENST00000422491 OR4K15Q8NH41 348 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 C2orf50Q96LR7 162 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 YPEL4Q96NS1 127 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 RAB33BQ9H082 229 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 DEC1Q9P2X7 70 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 LOC107986453A0A1B0GWG9 222 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 A0A1W2PPE2 198 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 LY86O95711 162 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 ITGA3P26006 1051 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 PPM1AP35813 382 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 P2RY4P51582 365 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 SPEM2Q0P670 501 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 RHEBQ15382 184 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 CD226Q15762 336 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 NSUN5P2Q63ZY6 315 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 ZNF440Q8IYI8 595 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 BCORP1Q8N888 145 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 GATSQ8NAP1 163 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 OR2I1PQ8NGU4 316 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 ASB16Q96NS5 453 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 ZFYVE21Q9BQ24 234 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 ABHD6Q9BV23 337 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 TWSG1Q9GZX9 223 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 SPACA1Q9HBV2 294 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 Q9N2J8 555 aa9.55□□□□□ -0.88
USP54-204ENST00000422491 ZNF217O75362 1048 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 YIF1AO95070 293 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 GAPDHP04406 335 aaKnown RBP9.54□□□□□ -0.88
USP54-204ENST00000422491 ISG15P05161 165 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 VSIG8P0DPA2 414 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 THBS4P35443 961 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 SQSTM1Q13501 440 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 KIR2DS3Q14952 304 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 FNDC7Q5VTL7 733 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 OR2A2Q6IF42 318 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 PTCRAQ6ISU1 281 aaPredicted RBP9.54□□□□□ -0.88
USP54-204ENST00000422491 KCTD18Q6PI47 426 aaPredicted RBP9.54□□□□□ -0.88
USP54-204ENST00000422491 PEG10Q86TG7 708 aaKnown RBP9.54□□□□□ -0.88
USP54-204ENST00000422491 OR56B1Q8NGI3 324 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 RSC1A1Q92681 617 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 TAAR8Q969N4 342 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 C14orf144Q96I85 54 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 CHST5Q9GZS9 411 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 ANAPC10Q9UM13 185 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 XIRP2A4UGR9 3374 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 TBC1D3DA0A087WVF3 549 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 TBC1D3LB9A6J9 549 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 TGFBR3LH3BV60 316 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 IFNA2P01563 188 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 RNF224P0DH78 156 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 CDX1P47902 265 aaPredicted RBP9.54□□□□□ -0.88
USP54-204ENST00000422491 NPY4RP50391 375 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 SRSF5Q13243 272 aaKnown RBP9.54□□□□□ -0.88
USP54-204ENST00000422491 TCEA2Q15560 299 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 GUK1Q16774 197 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 MIDNQ504T8 468 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 VAX1Q5SQQ9 334 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 TBC1D3CQ6IPX1 549 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 CBLN3Q6UW01 205 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 MARCH3Q86UD3 253 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 TBC1D3Q8IZP1 549 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms