RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 TRAM1Q15629 374 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 TBC1D28Q2M2D7 210 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 BCL2L15Q5TBC7 163 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 CD200R1LQ6Q8B3 271 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 ARL9Q6T311 187 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 NAA40Q86UY6 237 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 SATL1Q86VE3 508 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 MS4A15Q8N5U1 240 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 OR5AK2Q8NH90 309 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 WFIKKN1Q96NZ8 548 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 NDRG3Q9UGV2 375 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 RALYQ9UKM9 306 aaKnown RBP12.35□□□□□ -0.43
SF3B1-204ENST00000414963 SLC22A13Q9Y226 551 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF281Q9Y2X9 895 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 MYO18BQ8IUG5 2567 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 A0A0U1RQV5 110 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 IGLV3-1P01715 115 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 TTRP02766 147 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 CECR9P0C854 216 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 UBCP0CG48 685 aaKnown RBP12.34□□□□□ -0.43
SF3B1-204ENST00000414963 EPXP11678 715 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 PEX19P40855 299 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 SLC3A1Q07837 685 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 YIF1BQ5BJH7 314 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 FAM57BQ71RH2 274 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 MYPOPQ86VE0 399 aaPredicted RBP12.34□□□□□ -0.43
SF3B1-204ENST00000414963 ANKRD13BQ86YJ7 626 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 OR8B12Q8NGG6 310 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 ITFG2Q969R8 447 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 PPP1R14AQ96A00 147 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 APOBEC3DQ96AK3 386 aaPredicted RBP12.34□□□□□ -0.43
SF3B1-204ENST00000414963 C1QTNF6Q9BXI9 259 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 TBCCD1Q9NVR7 557 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 NPAP1Q9NZP6 1156 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 NDUFA13Q9P0J0 144 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF319Q9P2F9 582 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF391Q9UJN7 358 aa12.34□□□□□ -0.43
SF3B1-204ENST00000414963 DIDO1Q9BTC0 2240 aaKnown RBP12.34□□□□□ -0.43
SF3B1-204ENST00000414963 SMIM31A0A1B0GVY4 71 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 DPPA5A6NC42 116 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 A6NHS1 94 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 LCATP04180 440 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 ANXA2P07355 339 aaKnown RBP12.33□□□□□ -0.44
SF3B1-204ENST00000414963 SLC2A1P11166 492 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 CCL2P13500 99 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 TUBG1P23258 451 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 GRNP28799 593 aaKnown RBP12.33□□□□□ -0.44
SF3B1-204ENST00000414963 WNT5AP41221 380 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 CRYBB2P43320 205 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 SLC6A9P48067 706 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 ZNF83P51522 516 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 RPS11P62280 158 aaKnown RBP eCLIP12.33□□□□□ -0.44
SF3B1-204ENST00000414963 NAAAQ02083 359 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 TMEM244Q5VVB8 128 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 GDPGP1Q6ZNW5 385 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 Q6ZSR3 168 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 C1orf174Q8IYL3 243 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 PAQR4Q8N4S7 273 aaPredicted RBP12.33□□□□□ -0.44
SF3B1-204ENST00000414963 ZNF676Q8N7Q3 588 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 PLPP7Q8NBV4 271 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 ABHD4Q8TB40 342 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 PGAM5Q96HS1 289 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 PDCD1LG2Q9BQ51 273 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 MED18Q9BUE0 208 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 FUNDC2Q9BWH2 189 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 COMMD4Q9H0A8 199 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 OR10A2Q9H208 303 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 RGCCQ9H4X1 137 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 CDH20Q9HBT6 801 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 NGBQ9NPG2 151 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 BRD7Q9NPI1 651 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 NPDC1Q9NQX5 325 aaPredicted RBP12.33□□□□□ -0.44
SF3B1-204ENST00000414963 TUBG2Q9NRH3 451 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 EIF3KQ9UBQ5 218 aaKnown RBP12.33□□□□□ -0.44
SF3B1-204ENST00000414963 FLNCQ14315 2725 aa12.33□□□□□ -0.44
SF3B1-204ENST00000414963 IGHV2OR16-5A0A0B4J2B6 119 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 A0A1B0GTI1 187 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 PNMA8CA0A1B0GUJ8 204 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 TRDV1A0A1B0GX56 115 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 C5orf63A6NC05 138 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 H3BSA7 217 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 SC5DO75845 299 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 SERPINA3P01011 423 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 HLA-DPB1P04440 258 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 ACHEP22303 614 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 CCL1P22362 96 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 ANOS1P23352 680 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 PTAFRP25105 342 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 TMBIM6P55061 237 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 RPS25P62851 125 aaKnown RBP12.32□□□□□ -0.44
SF3B1-204ENST00000414963 SNAI3Q3KNW1 292 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 TIMM50Q3ZCQ8 353 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 GPR107Q5VW38 600 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 TMEM108Q6UXF1 575 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 UNQ9370/PRO34162Q6UXP9 181 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 CCDC54Q8NEL0 328 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 RGP1Q92546 391 aaPredicted RBP12.32□□□□□ -0.44
SF3B1-204ENST00000414963 SPSB4Q96A44 273 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 SGK3Q96BR1 496 aa12.32□□□□□ -0.44
SF3B1-204ENST00000414963 DACH2Q96NX9 599 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms