RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PPIAL4FP0DN26 164 aa18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 ZFP36P26651 326 aaKnown RBP18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 RPS27P42677 84 aaKnown RBP18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 SRP9P49458 86 aaKnown RBP18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 BHLHE23Q8NDY6 225 aa18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 OR51L1Q8NGJ5 315 aa18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 OR4Q3Q8NH05 313 aa18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 NMNAT2Q9BZQ4 307 aa18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 DDX28Q9NUL7 540 aaKnown RBP18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 TMEM100Q9NV29 134 aa18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 ARHGAP32A7KAX9 2087 aa18.26■□□□□ 0.51
CCDC28B-201ENST00000373602 M0R135 149 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 VENTXO95231 258 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 RAP2AP10114 183 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 EPHA1P21709 976 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 MDH2P40926 338 aaKnown RBP18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 SLC25A1P53007 311 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 MALLQ13021 153 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 CRMP1Q14194 572 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 GK3PQ14409 553 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 LYPD4Q6UWN0 246 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 OR2T33Q8NG76 320 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 OR9Q1Q8NGQ5 310 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 ZNF420Q8TAQ5 688 aaPredicted RBP18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 SPTSSAQ969W0 71 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 CCDC124Q96CT7 223 aaKnown RBP18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 ZNF799Q96GE5 643 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 CLPTM1LQ96KA5 538 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 LRGUKQ96M69 825 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 C7orf69Q9H7B7 122 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 ARMC1Q9NVT9 282 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 OPN4Q9UHM6 478 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 POLR3KQ9Y2Y1 108 aaPredicted RBP18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 COMMD3-BMI1R4GMX3 469 aa18.25■□□□□ 0.51
CCDC28B-201ENST00000373602 F5H0A9 414 aaPredicted RBP18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 F5H5P2 479 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 ACOT8O14734 319 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 SOX14O95416 240 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 PSKH1P11801 424 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 ADRA2CP18825 462 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 OTX1P32242 354 aaPredicted RBP18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 SLC6A9P48067 706 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 PRSS12P56730 875 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 PCK2Q16822 640 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 ZNF181Q2M3W8 571 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 CD300LDQ6UXZ3 194 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 MUC20Q8N307 709 aaPredicted RBP18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 SEMA6DQ8NFY4 1073 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 OR10G2Q8NGC3 310 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 NANPQ8TBE9 248 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 ZNF418Q8TF45 676 aaPredicted RBP18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 SLCO4A1Q96BD0 722 aa18.24■□□□□ 0.51
CCDC28B-201ENST00000373602 DYNC1I1O14576 645 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 HLA-DPB1P04440 258 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 SPI1P17947 270 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 FMO3P31513 532 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 ENTPD1P49961 510 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 SEC61A1P61619 476 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 PGAP1Q75T13 922 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 DCXRQ7Z4W1 244 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 ADGRG5Q8IZF4 528 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 ZNF511Q8NB15 262 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 ZFAND2BQ8WV99 257 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 NIPSNAP1Q9BPW8 284 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 CHID1Q9BWS9 393 aa18.23■□□□□ 0.51
CCDC28B-201ENST00000373602 FBN3Q75N90 2809 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 A8MXK9 166 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 CYB5R3P00387 301 aaPredicted RBP18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 FSHBP01225 129 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 IFNGP01579 166 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 GYPBP06028 91 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 GATA4P43694 442 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 TEX30Q5JUR7 227 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 DRAM2Q6UX65 266 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 USP43Q70EL4 1123 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 MOGAT3Q86VF5 341 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 CELF2-AS1Q8N7Q2 184 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 DEFB108BQ8NET1 73 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 GIPC3Q8TF64 312 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 THTPAQ9BU02 230 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 TMEM165Q9HC07 324 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 MMP26Q9NRE1 261 aa18.22■□□□□ 0.51
CCDC28B-201ENST00000373602 IGHV3-64DA0A0J9YX35 117 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 CEACAM18A8MTB9 384 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 TRAPPC2LH3BP13 241 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 ZNF593O00488 134 aaPredicted RBP18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 FSTL3O95633 263 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 CST1P01037 141 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 SPARCP09486 303 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 CLUP10909 449 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 CPT2P23786 658 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 PMELP40967 661 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 HILS1P60008 231 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 MAB21L1Q13394 359 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 SNAI3Q3KNW1 292 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 MRPL21Q7Z2W9 205 aaKnown RBP18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 SPRYD4Q8WW59 207 aaPredicted RBP18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 FEVQ99581 238 aa18.21■□□□□ 0.51
CCDC28B-201ENST00000373602 CMC2Q9NRP2 79 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms