RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 RNF4P78317 190 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC17A1Q14916 467 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 ZNF77Q15935 545 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 PNLIPRP3Q17RR3 467 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 ANKRD55Q3KP44 614 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 TMEM52BQ4KMG9 183 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 MAMDC2Q7Z304 686 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 ADGRE4PQ86SQ3 457 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 TMEM104Q8NE00 496 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 ASB17Q8WXJ9 295 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 KTI12Q96EK9 354 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 RBM18Q96H35 190 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 SERGEFQ9UGK8 458 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 NPIPB9F8W1W9 429 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 MPZL1O95297 269 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 IFNA2P01563 188 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 CSNK1EP49674 416 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 NDUFA6P56556 154 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 PRPS1P60891 318 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 ZNF260Q3ZCT1 412 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 ARRDC1Q8N5I2 433 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 PNLDC1Q8NA58 520 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 LRRC75AQ8NAA5 344 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 CD300LFQ8TDQ1 290 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 SERINC2Q96SA4 455 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 SPOCK3Q9BQ16 436 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 METTL8Q9H825 291 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC17A5Q9NRA2 495 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 TREM2Q9NZC2 230 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 FBXL21Q9UKT6 434 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 URADA6NGE7 173 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 NKX2-2O95096 273 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC34A2O95436 690 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 GPR75O95800 540 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC25A1P53007 311 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 MEF2DQ14814 521 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 DMRTC1Q5HYR2 192 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 C1QL3Q5VWW1 255 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 CBLN3Q6UW01 205 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 CLEC18BQ6UXF7 455 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 DPPA2Q7Z7J5 298 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 OR10G6Q8NH81 332 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 TMEM230Q96A57 120 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 SAT2Q96F10 170 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 TGM7Q96PF1 710 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 SPACA5Q96QH8 159 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 OR2A5Q96R48 311 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 NMES1Q9C002 83 aa12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 GDF2Q9UK05 429 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-201ENST00000331194 CFAP54Q96N23 3096 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 C1QL1O75973 258 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 WISP1O95388 367 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 CTSBP07858 339 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 SFTPBP07988 381 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 COX5BP10606 129 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 NR2C1P13056 603 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 SULT1A1P50225 295 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 ENPP2Q13822 863 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 ELAVL3Q14576 367 aaKnown RBP12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 ZNF74Q16587 644 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 ZNF239Q16600 458 aaKnown RBP12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 OR13C9Q8NGT0 318 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 OTOSQ8NHW6 89 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 AQP3Q92482 292 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 S100PBPQ96BU1 408 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 EIF5A2Q9GZV4 153 aaKnown RBP12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 PRO1933Q9H354 126 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 C5orf66Q9H5L9 145 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC5A6Q9Y289 635 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 MMP24Q9Y5R2 645 aa12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 ARHGEF17Q96PE2 2063 aaPredicted RBP12.02□□□□□ -0.48
CCDC88C-201ENST00000331194 OR13C7P0DN81 318 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 TAS2R60P59551 318 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 EGR4Q05215 589 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 FAM78AQ5JUQ0 283 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 C9orf50Q5SZB4 431 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 GFI1BQ5VTD9 330 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 NPSR1Q6W5P4 371 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 RD3Q7Z3Z2 195 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 ZDHHC22Q8N966 263 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 CCDC54Q8NEL0 328 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 RAB3CQ96E17 227 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 NICN1Q9BSH3 213 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 SLCO5A1Q9H2Y9 848 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 CKLFQ9UBR5 152 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 PHYHO14832 338 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 LDLRAD4O15165 306 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 OR10H2O60403 315 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 LILRB3O75022 631 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 APBB3O95704 486 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 CSTBP04080 98 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 ADH5P11766 374 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 ITGA3P26006 1051 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 PAX6P26367 422 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 VIPR2P41587 438 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 RPS10P46783 165 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 SLC6A9P48067 706 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 SPEM2Q0P670 501 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 KIAA0141Q14154 515 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 ERV3-1Q14264 604 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms