RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 FMO3P31513 532 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 GABRA3P34903 492 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 POLR2IP36954 125 aaKnown RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 IDH2P48735 452 aaKnown RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 PDX1P52945 283 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 P2RX3P56373 397 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 RAB11AP62491 216 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 MAT1AQ00266 395 aaKnown RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 SLC3A1Q07837 685 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 PJVKQ0ZLH3 352 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 FUT5Q11128 374 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 TSPAN31Q12999 210 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 GAGE2BQ13066 116 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 PMS2P3Q13401 168 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 NEDD8Q15843 81 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 RAB11BQ15907 218 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 ZNF141Q15928 474 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 DUSP5Q16690 384 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 DEFB110Q30KQ9 67 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 TIMM50Q3ZCQ8 353 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 GAGE2EQ4V326 116 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 MIDNQ504T8 468 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 KLHL22Q53GT1 634 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SLC25A53Q5H9E4 307 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SLC25A30Q5SVS4 291 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SYT6Q5T7P8 510 aaPredicted RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 LIPKQ5VXJ0 399 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SLX4IPQ5VYV7 408 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 C12orf73Q69YU5 71 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 TMEM225Q6GV28 225 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 TYW3Q6IPR3 259 aaKnown RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 GAGE2AQ6NT46 116 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 TMEM53Q6P2H8 277 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 TMEM71Q6P5X7 295 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 ZNF613Q6PF04 617 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 ZNF730Q6ZMV8 503 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 C9orf47Q6ZRZ4 202 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 LINC00299Q6ZSB3 139 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 PRSS41Q7RTY9 318 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SLC22A16Q86VW1 577 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 VRK2Q86Y07 508 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 ENTHD1Q8IYW4 607 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 ABCA7Q8IZY2 2146 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 CLDN22Q8N7P3 220 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 OR52R1Q8NGF1 315 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 OR5T3Q8NGG3 340 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 OR6T1Q8NGN1 323 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 OR4C6Q8NH72 309 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 CNIH3Q8TBE1 160 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SLC7A13Q8TCU3 470 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SPRYD4Q8WW59 207 aaPredicted RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 SSMEM1Q8WWF3 244 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 ACOT11Q8WXI4 607 aaPredicted RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 DAZLQ92904 295 aaKnown RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 ISOC1Q96CN7 298 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SLC38A2Q96QD8 506 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 NIPSNAP1Q9BPW8 284 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 COPS4Q9BT78 406 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 POLDIP3Q9BY77 421 aaKnown RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 GPN2Q9H9Y4 310 aaPredicted RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 SEBOXQ9HB31 216 aaPredicted RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 FOLH1BQ9HBA9 442 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SLC25A19Q9HC21 320 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 RAB18Q9NP72 206 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 MAN2C1Q9NTJ4 1040 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 MED17Q9NVC6 651 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 RPS6KB2Q9UBS0 482 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 GAGE2DQ9UEU5 116 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 WARS2Q9UGM6 360 aaKnown RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 RNF24Q9Y225 148 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 RNF6Q9Y252 685 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 SLC35A3Q9Y2D2 325 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 RPL36Q9Y3U8 105 aaKnown RBP4.5□□□□□ -1.69
SRP54-211ENST00000556445 KCNE3Q9Y6H6 103 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 EML5Q05BV3 1969 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 TRANK1O15050 2925 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 BRCA2P51587 3418 aa4.5□□□□□ -1.69
SRP54-211ENST00000556445 BPTFQ12830 3046 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 CHD9Q3L8U1 2897 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 KNL1Q8NG31 2342 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 LOC105371242A0A075B767 164 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 A0A087WUU8 490 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 IGLV5-39A0A0G2JS06 123 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 A0A1B0GX78 115 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 CLDN24A6NM45 220 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 CPSF4LA6NMK7 179 aaKnown RBP4.49□□□□□ -1.69
SRP54-211ENST00000556445 EFCAB7A8K855 629 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 SLC22A1O15245 554 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 B4GAT1O43505 415 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 XPNPEP2O43895 674 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 KCNK2O95069 426 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 RCBTB2O95199 551 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 CDK1P06493 297 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 MMP11P24347 488 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 APOBEC1P41238 236 aaKnown RBP4.49□□□□□ -1.69
SRP54-211ENST00000556445 RBM34P42696 430 aaKnown RBP4.49□□□□□ -1.69
SRP54-211ENST00000556445 PPICP45877 212 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 SERPINB10P48595 397 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 GSSP48637 474 aa4.49□□□□□ -1.69
SRP54-211ENST00000556445 COMPP49747 757 aaPredicted RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms