RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 C9orf40Q8IXQ3 194 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 LIPHQ8WWY8 451 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 PRDM6Q9NQX0 595 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 MRM2Q9UI43 246 aaKnown RBP13.48□□□□□ -0.25
CUX1-214ENST00000550008 R4GN57 208 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 SPTBN1Q01082 2364 aaKnown RBP13.48□□□□□ -0.25
CUX1-214ENST00000550008 TMEM221A6NGB7 291 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 PATE4P0C8F1 98 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 FAHP16930 419 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 CLDN20P56880 219 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 PCBD1P61457 104 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 BAMBIQ13145 260 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 TAF9Q16594 264 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 FJX1Q86VR8 437 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 FNDC9Q8TBE3 224 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 TTC9Q92623 222 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 POFUT1Q9H488 388 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 DNAH12Q6ZR08 3092 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 ANKUB1A6NFN9 424 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 HLA-DOBP13765 273 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 SPINK2P20155 84 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 ECH1Q13011 328 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 IL10RAQ13651 578 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 ARL6IP1Q15041 203 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 TSC22D1Q15714 1073 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 ZNF79Q15937 498 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 THEM4Q5T1C6 240 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 TMEM185AQ8NFB2 350 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 SMIM4Q8WVI0 70 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 SYT3Q9BQG1 590 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 DNTTIP1Q9H147 329 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 V9GYH0 126 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 MDC1Q14676 2089 aaKnown RBP13.48□□□□□ -0.25
CUX1-214ENST00000550008 SLC22A23A1A5C7 686 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 GK2Q14410 553 aaPredicted RBP13.48□□□□□ -0.25
CUX1-214ENST00000550008 INPP5JQ15735 1006 aaPredicted RBP13.48□□□□□ -0.25
CUX1-214ENST00000550008 DND1Q8IYX4 353 aaKnown RBP13.48□□□□□ -0.25
CUX1-214ENST00000550008 GABRG1Q8N1C3 465 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 LSMEM1Q8N8F7 131 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 STK35Q8TDR2 534 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 HINT2Q9BX68 163 aa13.48□□□□□ -0.25
CUX1-214ENST00000550008 BTG1P62324 171 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 IKZF1Q13422 519 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 HNF4GQ14541 408 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 LTC4SQ16873 150 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 NKAIN3Q8N8D7 197 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 OR51A4Q8NGJ6 313 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 OR4C16Q8NGL9 310 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 UPRTQ96BW1 309 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 OXGR1Q96P68 337 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 NICN1Q9BSH3 213 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 COLQQ9Y215 455 aaPredicted RBP13.47□□□□□ -0.25
CUX1-214ENST00000550008 TRAV1-2A0A0B4J238 106 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 A0A0B4J2A0 478 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 ANGPTL7O43827 346 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 ZIC2O95409 532 aaPredicted RBP13.47□□□□□ -0.25
CUX1-214ENST00000550008 NAGAP17050 411 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 ALOX5APP20292 161 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 EFNA3P52797 238 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 CLDN15P56746 228 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 SELENOVP59797 346 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 TGFBR3Q03167 851 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 PHLDA2Q53GA4 152 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 DMKNQ6E0U4 476 aaPredicted RBP13.47□□□□□ -0.25
CUX1-214ENST00000550008 LIX1LQ8IVB5 337 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 MENTQ9BUN1 341 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 OR5V1Q9UGF6 321 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 SHPKQ9UHJ6 478 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 ZNF175Q9Y473 711 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 DCTN6O00399 190 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 SULT1B1O43704 296 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 C1QBP02746 253 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 RPA2P15927 270 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 PTBP1P26599 531 aaKnown RBP eCLIP13.47□□□□□ -0.254e-11■■■■■ 42.8
CUX1-214ENST00000550008 GZMKP49863 264 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 SKP2Q13309 424 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 CD276Q5ZPR3 534 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 SLC25A45Q8N413 288 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 SECTM1Q8WVN6 248 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 WDFY2Q96P53 400 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 GDF15Q99988 308 aa13.47□□□□□ -0.25
CUX1-214ENST00000550008 BORCS7-ASMTA0A0B4J1R7 106 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 IGHA1P01876 353 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 CD63P08962 238 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 FZD5Q13467 585 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 ZNF684Q5T5D7 378 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 OR5AS1Q8N127 324 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 PAQR8Q8TEZ7 354 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 NANOS1Q8WY41 292 aaKnown RBP13.46□□□□□ -0.25
CUX1-214ENST00000550008 EIF5A2Q9GZV4 153 aaKnown RBP13.46□□□□□ -0.25
CUX1-214ENST00000550008 OBP2BQ9NPH6 170 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 EDARQ9UNE0 448 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 CACNA1DQ01668 2161 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 TRAPPC2LH3BP13 241 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 DHHO43323 396 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 TNFSF15O95150 251 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 LPLP06858 475 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 HOXB9P17482 250 aaPredicted RBP13.46□□□□□ -0.25
CUX1-214ENST00000550008 CPT2P23786 658 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 PDCD1Q15116 288 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms