RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 PDGFBP01127 241 aaPredicted RBP15.98■□□□□ 0.15
VIM-209ENST00000544301 ITGB2P05107 769 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 FKBP2P26885 142 aaKnown RBP15.98■□□□□ 0.15
VIM-209ENST00000544301 HIST3H3Q16695 136 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 C2orf68Q2NKX9 166 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 Q7L0L9 218 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 MUC20Q8N307 709 aaPredicted RBP15.98■□□□□ 0.15
VIM-209ENST00000544301 UXS1Q8NBZ7 420 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 MR1Q95460 341 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 B3GNT4Q9C0J1 378 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 CHST6Q9GZX3 395 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 ZNF700Q9H0M5 742 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 EXO5Q9H790 373 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 RAB22AQ9UL26 194 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 PTRH2Q9Y3E5 179 aaKnown RBP15.98■□□□□ 0.15
VIM-209ENST00000544301 FRYLO94915 3013 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 M0QYG6 137 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 SULT2B1O00204 365 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 NTN3O00634 580 aaPredicted RBP15.98■□□□□ 0.15
VIM-209ENST00000544301 KLK3P07288 261 aaPredicted RBP15.98■□□□□ 0.15
VIM-209ENST00000544301 MELTFP08582 738 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 CCL4P13236 92 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 GRK1Q15835 563 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 GALNT16Q8N428 558 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 PAQR4Q8N4S7 273 aaPredicted RBP15.98■□□□□ 0.15
VIM-209ENST00000544301 ACBD4Q8NC06 268 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 OR51E1Q8TCB6 317 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 PRDM6Q9NQX0 595 aa15.98■□□□□ 0.15
VIM-209ENST00000544301 LOC102725191A0A1B0GVB3 256 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 LEUTXA8MZ59 168 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 PATE3B3GLJ2 98 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 QDPRP09417 244 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 COX6A1P12074 109 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 GABREP78334 506 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 SLC35A1P78382 337 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 EXOSC2Q13868 293 aaKnown RBP15.97■□□□□ 0.15
VIM-209ENST00000544301 CLPPQ16740 277 aaPredicted RBP15.97■□□□□ 0.15
VIM-209ENST00000544301 ZNF529Q6P280 563 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 CDH26Q8IXH8 852 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 GTPBP8Q8N3Z3 284 aaPredicted RBP15.97■□□□□ 0.15
VIM-209ENST00000544301 SLC22A24Q8N4F4 322 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 AGBL5Q8NDL9 886 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 OR5D14Q8NGL3 314 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 NKD1Q969G9 470 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 TINAGL1Q9GZM7 467 aaPredicted RBP15.97■□□□□ 0.15
VIM-209ENST00000544301 MOB1AQ9H8S9 216 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 ASH2LQ9UBL3 628 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 KLK13Q9UKR3 277 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 EML6Q6ZMW3 1958 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 LINC00862A6NCI5 91 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 METTL21EPA6NDL7 271 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 TMEM235A6NFC5 223 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 WIPF3A6NGB9 483 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 ZNF726A6NNF4 738 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 KLF7O75840 302 aaPredicted RBP15.97■□□□□ 0.15
VIM-209ENST00000544301 SIX6O95475 246 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 IFNA7P01567 189 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 ZNF24P17028 368 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 PRKXP51817 358 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 H2BFSP57053 126 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 UBE2MP61081 183 aaKnown RBP15.97■□□□□ 0.15
VIM-209ENST00000544301 QRFPP83859 136 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 UNC119Q13432 240 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 EXT1Q16394 746 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 KCNMB1Q16558 191 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 OPN5Q6U736 354 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 TMPPEQ6ZT21 453 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 RHOUQ7L0Q8 258 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 OR2AK2Q8NG84 335 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 AQP3Q92482 292 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 SLX1AQ9BQ83 275 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 UQCC2Q9BRT2 126 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 TMPRSS13Q9BYE2 586 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 ALX4Q9H161 411 aaPredicted RBP15.97■□□□□ 0.15
VIM-209ENST00000544301 POFUT1Q9H488 388 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 ZNF107Q9UII5 783 aaPredicted RBP15.97■□□□□ 0.15
VIM-209ENST00000544301 VPS13AQ96RL7 3174 aa15.97■□□□□ 0.15
VIM-209ENST00000544301 A0A087WZY1 265 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 TEX51A0A1B0GUA7 166 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 RAB27BO00194 218 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 BPNT1O95861 308 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 CYB5AP00167 134 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 CD74P04233 296 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 CXCL2P19875 107 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 RAB3AP20336 220 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 ZFP36L1Q07352 338 aaKnown RBP15.96■□□□□ 0.15
VIM-209ENST00000544301 TAF13Q15543 124 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 ZNF260Q3ZCT1 412 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 PEAR1Q5VY43 1037 aaPredicted RBP15.96■□□□□ 0.15
VIM-209ENST00000544301 RAB12Q6IQ22 244 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 TMEM81Q6P7N7 255 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 IDO2Q6ZQW0 420 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 OR13C9Q8NGT0 318 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 PNPLA2Q96AD5 504 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 PNRC2Q9NPJ4 139 aaKnown RBP15.96■□□□□ 0.15
VIM-209ENST00000544301 UPB1Q9UBR1 384 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 HS3ST3B1Q9Y662 390 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 DMDP11532 3685 aa15.96■□□□□ 0.15
VIM-209ENST00000544301 C19orf67A6NJJ6 358 aa15.95■□□□□ 0.14
VIM-209ENST00000544301 ZNF736B4DX44 427 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms