RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 XKRXQ6PP77 449 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CSPG4Q6UVK1 2322 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CERS6Q6ZMG9 384 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM182Q6ZP80 229 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RASSF6Q6ZTQ3 369 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FAM92BQ6ZTR7 304 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SPATA19Q7Z5L4 167 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 C5orf24Q7Z6I8 188 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SERINC5Q86VE9 423 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PAQR7Q86WK9 346 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CARM1Q86X55 608 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RAB43Q86YS6 212 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ENTHD1Q8IYW4 607 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF679Q8IYX0 411 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 UBE2J2Q8N2K1 259 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 GPR137CQ8N3F9 429 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ACBD4Q8NC06 268 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RNF149Q8NC42 400 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 KIAA0895Q8NCT3 520 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FAM83FQ8NEG4 500 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 BEST4Q8NFU0 473 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 OR6Q1Q8NGQ2 317 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 OR13C2Q8NGS9 318 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 OR4Q3Q8NH05 313 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 NDNFQ8TB73 568 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RNASE8Q8TDE3 154 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 C16orf78Q8WTQ4 265 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SDR42E1Q8WUS8 393 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CACNG8Q8WXS5 425 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM158Q8WZ71 300 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SLC7A6Q92536 515 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ELMO1Q92556 727 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MYLPFQ96A32 169 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ADIPOR1Q96A54 375 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ISG20Q96AZ6 181 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FAF2Q96CS3 445 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 L3HYPDHQ96EM0 354 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FAHD2AQ96GK7 314 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CELF6Q96J87 481 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ALKBH3Q96Q83 286 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TAAR6Q96RI8 345 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 VAT1Q99536 393 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 HOPXQ9BPY8 73 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CMSS1Q9BQ75 279 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TCEAL7Q9BRU2 100 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SPXQ9BT56 116 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM109Q9BVC6 243 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 GGACTQ9BVM4 153 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 OSBPL11Q9BXB4 747 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 C1QTNF6Q9BXI9 259 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CCDC90BQ9GZT6 254 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PCBD2Q9H0N5 130 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PRO1933Q9H354 126 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TRABDQ9H4I3 376 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 REEP4Q9H6H4 257 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 NIPAL2Q9H841 368 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 METTL7AQ9H8H3 244 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PLEKHA3Q9HB20 300 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MID1IP1Q9NPA3 183 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SLCO1B3Q9NPD5 702 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 IL26Q9NPH9 171 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF302Q9NR11 478 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FBXO8Q9NRD0 319 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CTPS2Q9NRF8 586 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 DEPPQ9NTK1 212 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CUTCQ9NTM9 273 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ZCCHC3Q9NUD5 404 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MCUBQ9NWR8 336 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FBXL12Q9NXK8 326 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TAS2R9Q9NYW1 312 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SPG21Q9NZD8 308 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 GCNT4Q9P109 453 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SEC14L4Q9UDX3 406 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 OR12D3Q9UGF7 316 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF639Q9UID6 485 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PURGQ9UJV8 347 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 DKKL1Q9UK85 242 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ADAM28Q9UKQ2 775 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ITGA11Q9UKX5 1188 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 DNPEPQ9ULA0 475 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MOKQ9UQ07 419 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ERVW-1Q9UQF0 538 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SLC9A8Q9Y2E8 581 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 KCNIP3Q9Y2W7 256 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 WIF1Q9Y5W5 379 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 POMT1Q9Y6A1 747 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SPACA6W5XKT8 324 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SCN10AQ9Y5Y9 1956 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PKD1L1Q8TDX9 2849 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 NBASA2RRP1 2371 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ASCC3Q8N3C0 2202 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MED13Q9UHV7 2174 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 SF3B1O75533 1304 aaKnown RBP eCLIP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PCNX2A6NKB5 2137 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 KIAA1671Q9BY89 1806 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 A0A0G2JND7 137 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RNF103-CHMP3A0A140T963 221 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 SLC5A10A0PJK1 596 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PP2D1A8MPX8 630 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms