RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 COX16Q9P0S2 106 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 IKZF2Q9UKS7 526 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 VANGL2Q9ULK5 521 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 MAPK8IP3Q9UPT6 1336 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 SYNJ2BP-COX16A0A087WUM0 186 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 OR6C70A6NIJ9 312 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 CEACAM18A8MTB9 384 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 SLC22A5O76082 557 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 CLIC3O95833 236 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 EIF4EP06730 217 aaKnown RBP1.04□□□□□ -2.24
VPS50-216ENST00000484954 CTSLP07711 333 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 MCF2P10911 925 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 GPX4P36969 197 aaPredicted RBP1.04□□□□□ -2.24
VPS50-216ENST00000484954 TGFBR2P37173 567 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 SSR4P51571 173 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 P2RX1P51575 399 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 CRISP1P54107 249 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 GFERP55789 205 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 PRR3P79522 188 aaKnown RBP1.04□□□□□ -2.24
VPS50-216ENST00000484954 MRPS22P82650 360 aaKnown RBP1.04□□□□□ -2.24
VPS50-216ENST00000484954 DEFB134Q4QY38 66 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 TCEAL5Q5H9L2 206 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 TEX30Q5JUR7 227 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 PRAMEF20Q5VT98 475 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 TMEM107Q6UX40 140 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 RUFY3Q7L099 469 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 NBPF5PQ86XG9 351 aaPredicted RBP1.04□□□□□ -2.24
VPS50-216ENST00000484954 SLC22A9Q8IVM8 553 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 UBE2J2Q8N2K1 259 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 OR5T1Q8NG75 326 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 AKR7LQ8NHP1 331 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 SLC2A14Q8TDB8 520 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 LRRC29Q8WV35 223 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 PIBF1Q8WXW3 757 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 ELMO1Q92556 727 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 KIFAP3Q92845 792 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 TCEAL3Q969E4 200 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 PKNOX2Q96KN3 472 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 OR51M1Q9H341 326 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 GOLT1BQ9Y3E0 138 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 KANK1Q14678 1352 aa1.04□□□□□ -2.24
VPS50-216ENST00000484954 GLYATL1P3A0A0U1RQE8 302 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 OR5H1A6NKK0 313 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 KRBOX1C9JBD0 128 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 CDC7O00311 574 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 RAB29O14966 203 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 PABPC4LP0CB38 370 aaKnown RBP1.03□□□□□ -2.24
VPS50-216ENST00000484954 CD37P11049 281 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 ZNF35P13682 527 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 RAB3AP20336 220 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 PSMB5P28074 263 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 ACLYP53396 1101 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 KRTAP12-1P59990 96 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 TGFBIQ15582 683 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 PGGHGQ32M88 737 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 XKR7Q5GH72 579 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 WDR59Q6PJI9 974 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 SGPP2Q8IWX5 399 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 GTPBP8Q8N3Z3 284 aaPredicted RBP1.03□□□□□ -2.24
VPS50-216ENST00000484954 ZNF645Q8N7E2 425 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 COX18Q8N8Q8 333 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 NECAB1Q8N987 351 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 SPATA4Q8NEY3 305 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 OR5B3Q8NH48 314 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 GPR151Q8TDV0 419 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 ATP5SQ99766 215 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 SLC29A1Q99808 456 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 SAMD10Q9BYL1 202 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 ILKAPQ9H0C8 392 aaPredicted RBP1.03□□□□□ -2.24
VPS50-216ENST00000484954 LINC00574Q9H8X3 128 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 ANKRA2Q9H9E1 313 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 NEK6Q9HC98 313 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 HPCAL4Q9UM19 191 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 KCNE3Q9Y6H6 103 aa1.03□□□□□ -2.24
VPS50-216ENST00000484954 COL5A3P25940 1745 aaPredicted RBP1.03□□□□□ -2.24
VPS50-216ENST00000484954 BAZ2AQ9UIF9 1905 aaKnown RBP1.03□□□□□ -2.25
VPS50-216ENST00000484954 IGHV3-49A0A0A0MS15 119 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 TRBV9A0A0B4J1U6 114 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 IGHV1-3A0A0C4DH29 117 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 GOLGA8OA6NCC3 632 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 NCBP2LA6PVI3 153 aaKnown RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 GABRR3A8MPY1 467 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 NDUFC2-KCTD14E9PQ53 114 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 GOLGA8NF8WBI6 632 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 H0Y8G0 127 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 C3orf84H3BNL1 204 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 NACADO15069 1562 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 SCAMP2O15127 329 aaKnown RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 EIF3HO15372 352 aaKnown RBP eCLIP1.02□□□□□ -2.25
VPS50-216ENST00000484954 NVLO15381 856 aaKnown RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 NUPL2O15504 423 aaKnown RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 EIF1BO60739 113 aaKnown RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 GLSO94925 669 aaPredicted RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 SNX4O95219 450 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 IGHV3-11P01762 117 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 ANXA5P08758 320 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 NTF3P20783 257 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 CHMLP26374 656 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 CALRP27797 417 aaKnown RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 IFNA8P32881 189 aa1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms