RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 OR52E6Q96RD3 313 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 F2RL3Q96RI0 385 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ATF6BQ99941 703 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 NMNAT2Q9BZQ4 307 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 SCAND2PQ9GZW5 306 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 NHEJ1Q9H9Q4 299 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 Q9N2J8 555 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 NUFIP1Q9UHK0 495 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF346Q9UL40 294 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 FOXJ3Q9UPW0 622 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 PSG8Q9UQ74 426 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 DOCK5Q9H7D0 1870 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 SPTBN4Q9H254 2564 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 KIAA1671Q9BY89 1806 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 USP34Q70CQ2 3546 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 A0A1B0GTL3 188 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 CORTO00230 105 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 TNFRSF13BO14836 293 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 FFAR3O14843 346 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 GPR42O15529 346 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SYNGR3O43761 229 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 AIREO43918 545 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 PIAS1O75925 651 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 TNFSF15O95150 251 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 THY1P04216 161 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 GATA3P23771 443 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ITPKBP27987 946 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SOX2P48431 317 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 RARRES1P49788 294 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 RIPPLY3P57055 190 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 RAE1P78406 368 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ADORA2A-AS1P86434 159 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SP4Q02446 784 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SPA17Q15506 151 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 MAPK14Q16539 360 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 IL17AQ16552 155 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SRSF7Q16629 238 aaKnown RBP eCLIP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 POU2AF1Q16633 256 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 CCSMST1Q4G0I0 132 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM102AQ5T9C2 384 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 CBLN3Q6UW01 205 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 DOK3Q7L591 496 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 DTX1Q86Y01 620 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM25Q86YD3 366 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 UEVLDQ8IX04 471 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 PELI3Q8N2H9 469 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 METTL13Q8N6R0 699 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 LINC01465Q8N7H1 131 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ARIH2OSQ8N7S6 290 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 KIAA0895Q8NCT3 520 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 OR5M9Q8NGP3 310 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 OR1L4Q8NGR5 311 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM45AQ8TCE6 357 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 LGALS14Q8TCE9 139 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 LCN9Q8WX39 176 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 IGSF8Q969P0 613 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 HIST1H2BAQ96A08 127 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 CMBLQ96DG6 245 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 PIK3IP1Q96FE7 263 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SMIM8Q96KF7 97 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 TEX37Q96LM6 180 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ACCSQ96QU6 501 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SPAG8Q99932 426 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 RAB11FIP5Q9BXF6 653 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 QTRT1Q9BXR0 403 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 DUSP16Q9BY84 665 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ABCG5Q9H222 651 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SRMSQ9H3Y6 488 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC2A4RGQ9NR83 387 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 CALML5Q9NZT1 146 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 GPR132Q9UNW8 380 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC35A3Q9Y2D2 325 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 RFNGQ9Y644 331 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 COL1A2P08123 1366 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 MEIKINA0A087WXM9 373 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 IGKV6-21A0A0C4DH24 114 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 IGSF23A1L1A6 192 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 OR6C6A6NF89 314 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 HHLA1C9JL84 531 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 YY2O15391 372 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 TPST1O60507 370 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 CTSVO60911 334 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 OR6A2O95222 327 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 VENTXO95231 258 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 TOMM40O96008 361 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 OR56A5P0C7T3 313 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 IL7RP16871 459 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 MNDAP41218 407 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 AGTR2P50052 363 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 GALCP54803 685 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 F2RL1P55085 397 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ARHGAP11BQ3KRB8 267 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF585BQ52M93 769 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 NHLRC3Q5JS37 347 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 LDLRAD2Q5SZI1 272 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SDHAF4Q5VUM1 108 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 STEAP4Q687X5 459 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM131AQ6UXB0 335 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 C19orf35Q6ZS72 473 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ASCL5Q7RTU5 278 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms