RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 FOXL2P58012 376 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 PABPC1L2AQ5JQF8 200 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 NANOGP1Q8N7R0 232 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 GDPD1Q8N9F7 314 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 FAM96BQ9Y3D0 163 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 TICRRQ7Z2Z1 1910 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 LRP5LA4QPB2 252 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 CST2P09228 141 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 PPP3CBP16298 524 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 SPATA46Q5T0L3 261 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 CDCP2Q5VXM1 449 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 FBXW9Q5XUX1 488 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 KANSL1Q7Z3B3 1105 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 C4orf45Q96LM5 186 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 TAS2R4Q9NYW5 299 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 FLRT3Q9NZU0 649 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 ANKRD33BA6NCL7 494 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 C9orf172C9J069 976 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 IGFBP1P08833 259 aaPredicted RBP9.07□□□□□ -0.96
USP54-201ENST00000339859 SRMP19623 302 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 TAS2R19P59542 299 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 DOC2BQ14184 412 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 ST3GAL2Q16842 350 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 LPCAT3Q6P1A2 487 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 LRRC28Q86X40 367 aaPredicted RBP9.07□□□□□ -0.96
USP54-201ENST00000339859 TMEM171Q8WVE6 324 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 NARS2Q96I59 477 aaKnown RBP9.07□□□□□ -0.96
USP54-201ENST00000339859 FOXD3Q9UJU5 478 aaPredicted RBP9.07□□□□□ -0.96
USP54-201ENST00000339859 SRP14P37108 136 aaKnown RBP9.07□□□□□ -0.96
USP54-201ENST00000339859 TNFAIP6P98066 277 aaPredicted RBP9.07□□□□□ -0.96
USP54-201ENST00000339859 C19orf57Q0VDD7 668 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 ZNF517Q6ZMY9 492 aaPredicted RBP9.07□□□□□ -0.96
USP54-201ENST00000339859 Q8IYB0 196 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 ADIPOR1Q96A54 375 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 TSSK2Q96PF2 358 aa9.07□□□□□ -0.96
USP54-201ENST00000339859 F5P12259 2224 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 SMAD9O15198 467 aaKnown RBP9.06□□□□□ -0.96
USP54-201ENST00000339859 ADPRHL1Q8NDY3 354 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 OTOSQ8NHW6 89 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 ABHD17AQ96GS6 310 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 SFXN3Q9BWM7 321 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 NYNRINQ9P2P1 1898 aaKnown RBP9.06□□□□□ -0.96
USP54-201ENST00000339859 ZNF32P17041 273 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 ATF1P18846 271 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 HTR2AP28223 471 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 LIPAP38571 399 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 HCCSP53701 268 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 HES1Q14469 280 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 C1orf174Q8IYL3 243 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 RAB1CQ92928 201 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 FAM131CQ96AQ9 280 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 PIK3IP1Q96FE7 263 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 PHB2Q99623 299 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 DOK1Q99704 481 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 MRPL15Q9P015 296 aaKnown RBP9.06□□□□□ -0.96
USP54-201ENST00000339859 WDR81Q562E7 1941 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 HS3ST1O14792 307 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 IFNA5P01569 189 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 NFYBP25208 207 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 C6orf183Q5T699 404 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 GSG1LQ6UXU4 331 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 PRSS33Q8NF86 280 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 OR6F1Q8NGZ6 308 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 EHFQ9NZC4 300 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 TRAV6A0A075B6T7 132 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 C7orf72A4D263 438 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 ZNF732B4DXR9 585 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 FAM87AP0C7U9 286 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 POLR2IP36954 125 aaKnown RBP9.06□□□□□ -0.96
USP54-201ENST00000339859 AGAP6Q5VW22 663 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 CNIH2Q6PI25 160 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 SLC36A1Q7Z2H8 476 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 DEFB108BQ8NET1 73 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 ABHD6Q9BV23 337 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 LIN7BQ9HAP6 207 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 GPR35Q9HC97 309 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 IL20Q9NYY1 176 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 MSRB2Q9Y3D2 182 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 TRDV1A0A1B0GX56 115 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 E9PI62 339 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 AQP8O94778 261 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 KNG1P01042 644 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 CD53P19397 219 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 CD34P28906 385 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 ANGPTL5Q86XS5 388 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 LIPGQ9Y5X9 500 aa9.06□□□□□ -0.96
USP54-201ENST00000339859 BGLAPP02818 100 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 P2RY6Q15077 328 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 MSMO1Q15800 293 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 ANKRD13BQ86YJ7 626 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 OR1S1Q8NH92 325 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 ABHD3Q8WU67 409 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 C7orf50Q9BRJ6 194 aaKnown RBP9.05□□□□□ -0.96
USP54-201ENST00000339859 CXXC4Q9H2H0 198 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 C20orf141Q9NUB4 165 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 CD300LBA8K4G0 201 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 AQP7O14520 342 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 ARPC3O15145 178 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 BET1O15155 118 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 APOA2P02652 100 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms