RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 SDCBPO00560 298 aaPredicted RBP17.49■□□□□ 0.39
USP48-201ENST00000308271 ZNF217O75362 1048 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 SLC2A1P11166 492 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 TMEM182Q6ZP80 229 aaPredicted RBP17.49■□□□□ 0.39
USP48-201ENST00000308271 OR51E1Q8TCB6 317 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 PIGCQ92535 297 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 MS4A7Q9GZW8 240 aaPredicted RBP17.49■□□□□ 0.39
USP48-201ENST00000308271 MPC2O95563 127 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 P04436 131 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 SNRPEP62304 92 aaKnown RBP17.48■□□□□ 0.39
USP48-201ENST00000308271 LINC01555Q8NAE3 123 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 MAP3K3Q99759 626 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 ZNF2Q9BSG1 426 aaPredicted RBP17.48■□□□□ 0.39
USP48-201ENST00000308271 OR6C76A6NM76 312 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 ZNF724A8MTY0 619 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 LRP3O75074 770 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 CEACAM5P06731 702 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 FOSL1P15407 271 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 RAB4BP61018 213 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 OVCH2Q7RTZ1 564 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 FLVCR1Q9Y5Y0 555 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 UBR3Q6ZT12 1888 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 DPP4P27487 766 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 PCBD1P61457 104 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 PPP1R1AQ13522 171 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 VWA2Q5GFL6 755 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 WDR38Q5JTN6 314 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 ARHGEF39Q8N4T4 335 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 ZNF485Q8NCK3 441 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 AKR1E2Q96JD6 320 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 IDSB3KWA1 339 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 NKX2-1P43699 371 aaPredicted RBP17.48■□□□□ 0.39
USP48-201ENST00000308271 ZNF547Q8IVP9 402 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 SLC37A2Q8TED4 501 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 GNPNAT1Q96EK6 184 aaPredicted RBP17.48■□□□□ 0.39
USP48-201ENST00000308271 KIRREL1Q96J84 757 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 NRSN2Q9GZP1 204 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 NKX2-4Q9H2Z4 354 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 OBP2AQ9NY56 170 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 SUSD2Q9UGT4 822 aa17.48■□□□□ 0.39
USP48-201ENST00000308271 STMND1H3BQB6 276 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 CLDN17P56750 224 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 ELAVL1Q15717 326 aaKnown RBP17.47■□□□□ 0.39
USP48-201ENST00000308271 TMEM217Q8N7C4 229 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 PIGTQ969N2 578 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 SLC39A9Q9NUM3 307 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 TRBV11-1A0A0K0K1C0 115 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 SCGB1D1O95968 90 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 EEF1A1P68104 462 aaKnown RBP17.47■□□□□ 0.39
USP48-201ENST00000308271 MYO7AQ13402 2215 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 CEP290O15078 2479 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 GPR31O00270 319 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 ADRA2CP18825 462 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 HSF1Q00613 529 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 ZNF273Q14593 569 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 DEFB133Q30KQ1 61 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 ZNF425Q6IV72 752 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 GJC3Q8NFK1 279 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 TOE1Q96GM8 510 aaKnown RBP17.47■□□□□ 0.39
USP48-201ENST00000308271 TOLLIPQ9H0E2 274 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 GAR1Q9NY12 217 aaKnown RBP17.47■□□□□ 0.39
USP48-201ENST00000308271 NXT1Q9UKK6 140 aaKnown RBP17.47■□□□□ 0.39
USP48-201ENST00000308271 CST4P01036 141 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 NMBP08949 121 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 NQO2P16083 231 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 SLC35A1P78382 337 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 RAB30Q15771 203 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 TAF9Q16594 264 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 CHRNA9Q9UGM1 479 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 AK3Q9UIJ7 227 aa17.47■□□□□ 0.39
USP48-201ENST00000308271 PCM1Q15154 2024 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 TMEM272A0A1B0GTI8 110 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 ZNF587BE7ETH6 402 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 NME1P15531 152 aaKnown RBP17.46■□□□□ 0.39
USP48-201ENST00000308271 CCR2P41597 374 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 MSMO1Q15800 293 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 B4GALT7Q9UBV7 327 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 ZMAT5Q9UDW3 170 aaKnown RBP17.46■□□□□ 0.39
USP48-201ENST00000308271 ZNF98A6NK75 572 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 HOXA1P49639 335 aaPredicted RBP17.46■□□□□ 0.39
USP48-201ENST00000308271 ADPRHP54922 357 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 RAB31Q13636 194 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 PNLIPRP3Q17RR3 467 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 CORO6Q6QEF8 472 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 SUMF1Q8NBK3 374 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 SLC38A9Q8NBW4 561 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 HSD17B8Q92506 261 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 AP1S3Q96PC3 154 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 CDCA3Q99618 268 aaPredicted RBP17.46■□□□□ 0.39
USP48-201ENST00000308271 MMP25Q9NPA2 562 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 TUBG2Q9NRH3 451 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 LRRC37AA6NMS7 1700 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 A0A0U1RQK1 487 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 MT-CO2P00403 227 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 APOBEC1P41238 236 aaKnown RBP17.46■□□□□ 0.39
USP48-201ENST00000308271 LRRC18Q8N456 261 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 IL1F10Q8WWZ1 152 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 NPAS1Q99742 590 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 SAMD10Q9BYL1 202 aa17.46■□□□□ 0.39
USP48-201ENST00000308271 RAB18Q9NP72 206 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms