RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 MEIS3P1A6NDR6 274 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 DOK2O60496 412 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 CLN5O75503 358 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 PPICP45877 212 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 DSCR9P59020 149 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 BAMBIQ13145 260 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 OR4D1Q15615 310 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 NRN1LQ496H8 165 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 TMEM215Q68D42 235 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 Q6ZTK2 550 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 ZNF695Q8IW36 515 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 OR52N5Q8NH56 324 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 OR5AK2Q8NH90 309 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 CDS1Q92903 461 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 KCNJ15Q99712 375 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 C1QTNF6Q9BXI9 259 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 PRO1933Q9H354 126 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 NMNAT1Q9HAN9 279 aaPredicted RBP7.1□□□□□ -1.27
USP3-201ENST00000268049 C1RLQ9NZP8 487 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 LIPGQ9Y5X9 500 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 OR5H14A6NHG9 310 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 OR5H1A6NKK0 313 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 GIPP09681 153 aaPredicted RBP7.1□□□□□ -1.27
USP3-201ENST00000268049 CD22P20273 847 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 FAM209BQ5JX69 171 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 CLLU1Q5K131 121 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 NXNL2Q5VZ03 156 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 LFNGQ8NES3 379 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 OR9Q2Q8NGE9 314 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 C20orf85Q9H1P6 137 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 DDX31Q9H8H2 851 aaKnown RBP7.1□□□□□ -1.27
USP3-201ENST00000268049 ZDHHC11Q9H8X9 412 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 GCM1Q9NP62 436 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 PTPRFP10586 1907 aa7.1□□□□□ -1.27
USP3-201ENST00000268049 M0R143 59 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 SLC25A17O43808 307 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 THBS1P07996 1170 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 QDPRP09417 244 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 CLEC2LP0C7M8 214 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 ZNF26P17031 533 aaPredicted RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 LTBRP36941 435 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 PGGT1BP53609 377 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 KLF3P57682 345 aaPredicted RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 ADIRFQ15847 76 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 UBE2NLQ5JXB2 153 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 OR2T2Q6IF00 324 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 TEX261Q6UWH6 196 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 NUFIP2Q7Z417 695 aaKnown RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 GALNT10Q86SR1 603 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 GABRG1Q8N1C3 465 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 OR10D4PQ8NGN7 298 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 RBMXL1Q96E39 390 aaKnown RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 NSUN5Q96P11 429 aaKnown RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 ZNF586Q9NXT0 402 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 U3KQ87 197 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 GRPP07492 148 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 ZNF25P17030 456 aaPredicted RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 ARNTP27540 789 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 MRPS34P82930 218 aaKnown RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 PMPCAQ10713 525 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 SNTB1Q13884 538 aaKnown RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 SMN1Q16637 294 aaKnown RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 RHBDD2Q6NTF9 364 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 H1FNTQ75WM6 255 aaPredicted RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 ABI3BPQ7Z7G0 1075 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 SLC38A6Q8IZM9 456 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 PRR18Q8N4B5 295 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 KCNRGQ8N5I3 272 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 OR4M1Q8NGD0 313 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 OR52E2Q8NGJ4 325 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 RAB40AQ8WXH6 277 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 TOMM40LQ969M1 308 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 SEC22AQ96IW7 307 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 ADGRG7Q96K78 797 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 KCNIP2Q9NS61 270 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 MRPL22Q9NWU5 206 aaKnown RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 URB1O60287 2271 aaKnown RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 MYO18AQ92614 2054 aaKnown RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 A0A087X0M5 115 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 A0A1B0GX30 115 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 ZNF98A6NK75 572 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 UMAD1C9J7I0 102 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 ERVH48-1M5A8F1 160 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 ELK1P19419 428 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 NFYBP25208 207 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 PRRX1P54821 245 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 CLDN8P56748 225 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 KCNJ10P78508 379 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 GTDC1Q4AE62 458 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 SYT6Q5T7P8 510 aaPredicted RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 ZNF534Q76KX8 674 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 OR4K5Q8NGD3 323 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 OR5D14Q8NGL3 314 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 OR1S1Q8NH92 325 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 LRRC3BQ96PB8 259 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 STACQ99469 402 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 SPACA1Q9HBV2 294 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 TNFRSF19Q9NS68 423 aa7.09□□□□□ -1.27
USP3-201ENST00000268049 LYRM2Q9NU23 88 aaPredicted RBP7.09□□□□□ -1.27
USP3-201ENST00000268049 IL20Q9NYY1 176 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms