RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 MS4A3Q96HJ5 214 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 ZNF75AQ96N20 296 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 INTS14Q96SY0 518 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 KCNS3Q9BQ31 491 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 RNF121Q9H920 327 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 WDR76Q9H967 626 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 SRA1Q9HD15 236 aaKnown RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 AMBNQ9NP70 447 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 BEX4Q9NWD9 120 aaPredicted RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 CHCHD3Q9NX63 227 aaKnown RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 LAMP3Q9UQV4 416 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 ERGIC3Q9Y282 383 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 AKAP9Q99996 3911 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 CREBBPQ92793 2442 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 IGHV2OR16-5A0A0B4J2B6 119 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 A0A1W2PPL8 197 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 SMPD2O60906 423 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 CLPTM1O96005 669 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 CRYAAP02489 173 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 MT-ND2P03891 347 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ZNF823P16415 610 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ZNF14P17017 642 aaPredicted RBP8.54□□□□□ -1.04
CLN3-261ENST00000637686 PCMT1P22061 227 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 C21orf33P30042 268 aaPredicted RBP8.54□□□□□ -1.04
CLN3-261ENST00000637686 PYCR1P32322 319 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 TTKP33981 857 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ENTPD1P49961 510 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ACTA2P62736 377 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ACTG2P63267 376 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ACSM1Q08AH1 577 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 BLMHQ13867 455 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 GALEQ14376 348 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 RAB39AQ14964 217 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 SLC36A2Q495M3 483 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 UBE2UQ5VVX9 321 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 DEGS2Q6QHC5 323 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ZNF367Q7RTV3 350 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 KCTD20Q7Z5Y7 419 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 IL17RDQ8NFM7 739 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 OR51G2Q8NGK0 314 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 OTOSQ8NHW6 89 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ZNRF4Q8WWF5 429 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ASB17Q8WXJ9 295 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 NABP1Q96AH0 204 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ZMYND19Q96E35 227 aaPredicted RBP8.54□□□□□ -1.04
CLN3-261ENST00000637686 FOXN4Q96NZ1 517 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 TSSK2Q96PF2 358 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 DHRS9Q9BPW9 319 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ZNF649Q9BS31 505 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 MND1Q9BWT6 205 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 CXXC4Q9H2H0 198 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 SIAEQ9HAT2 523 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 ISYNA1Q9NPH2 558 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 POLE4Q9NR33 117 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 MRPL22Q9NWU5 206 aaKnown RBP8.54□□□□□ -1.04
CLN3-261ENST00000637686 COA3Q9Y2R0 106 aaPredicted RBP8.54□□□□□ -1.04
CLN3-261ENST00000637686 CAB39Q9Y376 341 aaPredicted RBP8.54□□□□□ -1.04
CLN3-261ENST00000637686 COMMD3-BMI1R4GMX3 469 aa8.54□□□□□ -1.04
CLN3-261ENST00000637686 C12orf71A8MTZ7 269 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 SULT1C4O75897 302 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 CD8AP01732 235 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 TFP02787 698 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 SERPINA5P05154 406 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 SCG5P05408 212 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 MMP7P09237 267 aaPredicted RBP8.53□□□□□ -1.04
CLN3-261ENST00000637686 LIMS3P0CW19 117 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 LIMS4P0CW20 117 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 ALOX5APP20292 161 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 MSR1P21757 451 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 RPL5P46777 297 aaKnown RBP8.53□□□□□ -1.04
CLN3-261ENST00000637686 ALDH3B2P48448 385 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 BDH1Q02338 343 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 ROM1Q03395 351 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 EMX1Q04741 257 aaPredicted RBP8.53□□□□□ -1.04
CLN3-261ENST00000637686 HGFACQ04756 655 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 EGR3Q06889 387 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 CDONQ4KMG0 1287 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 SYT6Q5T7P8 510 aaPredicted RBP8.53□□□□□ -1.04
CLN3-261ENST00000637686 FAM27BQ5VT28 67 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 AGAP6Q5VW22 663 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 SLC18B1Q6NT16 456 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 TMEM53Q6P2H8 277 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 VHLLQ6RSH7 139 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 TMPRSS11AQ6ZMR5 421 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 DTX2Q86UW9 622 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 ZNF584Q8IVC4 421 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 SLC35F2Q8IXU6 374 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 FBXL14Q8N1E6 418 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 NANOGP1Q8N7R0 232 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 OR10H5Q8NGA6 315 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 OR4F15Q8NGB8 312 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 FBXO17Q96EF6 278 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 PERPQ96FX8 193 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 RHNO1Q9BSD3 238 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 TRAF4Q9BUZ4 470 aaPredicted RBP8.53□□□□□ -1.04
CLN3-261ENST00000637686 KCNN2Q9H2S1 579 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 CXorf56Q9H5V9 222 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 RERGLQ9H628 205 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 ACOT13Q9NPJ3 140 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 BATF3Q9NR55 127 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms