RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ISG15P05161 165 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 CX3CR1P49238 355 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 ELFN2Q5R3F8 820 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 ZNF704Q6ZNC4 412 aaPredicted RBP14.81□□□□□ -0.04
CLN3-252ENST00000636907 ZNF100Q8IYN0 542 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 ELMOD2Q8IZ81 293 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 WDFY2Q96P53 400 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 TRIB1Q96RU8 372 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 GP6Q9HCN6 339 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 ZNF587BE7ETH6 402 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 P2RY10O00398 339 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 TTRP02766 147 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 RAF1P04049 648 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 UBCP0CG48 685 aaKnown RBP14.8□□□□□ -0.04
CLN3-252ENST00000636907 ACHEP22303 614 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 THBS2P35442 1172 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 FOXG1P55316 489 aaPredicted RBP14.8□□□□□ -0.04
CLN3-252ENST00000636907 ZNF121P58317 390 aaPredicted RBP14.8□□□□□ -0.04
CLN3-252ENST00000636907 GALK2Q01415 458 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 STK11Q15831 433 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 DDI2Q5TDH0 399 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 TMEM244Q5VVB8 128 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 C16orf87Q6PH81 154 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 ZNF813Q6ZN06 617 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 CROCCP3Q8IVE0 287 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 SKA3Q8IX90 412 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 PARP16Q8N5Y8 322 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 ASB5Q8WWX0 329 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 GFI1Q99684 422 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 KCNJ15Q99712 375 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 ZCCHC4Q9H5U6 513 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 C12orf49Q9H741 205 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 MOB1AQ9H8S9 216 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 PLEK2Q9NYT0 353 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 UPB1Q9UBR1 384 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 NUFIP1Q9UHK0 495 aaKnown RBP14.8□□□□□ -0.04
CLN3-252ENST00000636907 DAPK2Q9UIK4 370 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 HHLA2Q9UM44 414 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 DHDHQ9UQ10 334 aa14.8□□□□□ -0.04
CLN3-252ENST00000636907 ANKRD11Q6UB99 2663 aaPredicted RBP14.79□□□□□ -0.04
CLN3-252ENST00000636907 MGAQ8IWI9 3026 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 URB1O60287 2271 aaKnown RBP14.79□□□□□ -0.04
CLN3-252ENST00000636907 TRAV8-7A0A075B6U6 113 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 NOTOA8MTQ0 251 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 ACSM4P0C7M7 580 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 PATE4P0C8F1 98 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 SLC2A1P11166 492 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 SLC2A2P11168 524 aaPredicted RBP14.79□□□□□ -0.04
CLN3-252ENST00000636907 ZNF32P17041 273 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 ANOS1P23352 680 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 CTSSP25774 331 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 PPP5CP53041 499 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 TMPRSS3P57727 454 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 ARF1P84077 181 aaKnown RBP14.79□□□□□ -0.04
CLN3-252ENST00000636907 ZNF45Q02386 682 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 SPANXN2Q5MJ10 180 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 C9orf135Q5VTT2 229 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 STAC2Q6ZMT1 411 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 ZNF283Q8N7M2 679 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 FGFBP3Q8TAT2 258 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 ACOT12Q8WYK0 555 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 THRSPQ92748 146 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 GMPPAQ96IJ6 420 aaPredicted RBP14.79□□□□□ -0.04
CLN3-252ENST00000636907 SLC30A2Q9BRI3 323 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 TCF7L1Q9HCS4 588 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 PRSS50Q9UI38 385 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 SPTBN4Q9H254 2564 aa14.79□□□□□ -0.04
CLN3-252ENST00000636907 PDCD5O14737 125 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 HPGDSO60760 199 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 SS18L1O75177 396 aaPredicted RBP14.78□□□□□ -0.04
CLN3-252ENST00000636907 EPXP11678 715 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 SCRN3Q0VDG4 424 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 FAPQ12884 760 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 RAB35Q15286 201 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 RSPO1Q2MKA7 263 aaPredicted RBP14.78□□□□□ -0.04
CLN3-252ENST00000636907 NRN1LQ496H8 165 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 MZT2AQ6P582 158 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 SLC16A14Q7RTX9 510 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 FGD2Q7Z6J4 655 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 LRRTM1Q86UE6 522 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 UBE2J2Q8N2K1 259 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 ZNF433Q8N7K0 673 aaPredicted RBP14.78□□□□□ -0.04
CLN3-252ENST00000636907 OR8B12Q8NGG6 310 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 SLC7A6Q92536 515 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 KCTD12Q96CX2 325 aaKnown RBP14.78□□□□□ -0.04
CLN3-252ENST00000636907 SLITRK2Q9H156 845 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 PALMDQ9NP74 551 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 N6AMT1Q9Y5N5 214 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 SPENQ96T58 3664 aaKnown RBP14.78□□□□□ -0.04
CLN3-252ENST00000636907 DMXL2Q8TDJ6 3036 aa14.78□□□□□ -0.04
CLN3-252ENST00000636907 ARPC4-TTLL3A0A0A6YYG9 625 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 OR14I1A6ND48 311 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 F5H5K5 113 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 SGCEO43556 437 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 CRYABP02511 175 aaKnown RBP14.77□□□□□ -0.04
CLN3-252ENST00000636907 ADRB1P08588 477 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 ADRA2CP18825 462 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 ATF1P18846 271 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 CD40LGP29965 261 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 PPP3R1P63098 170 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms