RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 MSMBP08118 114 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 LYNX1P0DP58 116 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 NR2C1P13056 603 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 CTLA4P16410 223 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 PAICSP22234 425 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 SERPINF1P36955 418 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 CLRN1P58418 232 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 IL5RAQ01344 420 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 FMODQ06828 376 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 CDK5R2Q13319 367 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 C9orf135Q5VTT2 229 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 MEDAGQ5VYS4 303 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 CARD17Q5XLA6 110 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 PLBD1Q6P4A8 553 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 UGT2A3Q6UWM9 527 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 LINGO2Q7L985 606 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 C1QL4Q86Z23 238 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 OR6V1Q8N148 313 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 POMGNT2Q8NAT1 580 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 SYT14Q8NB59 555 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 BBS1Q8NFJ9 593 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 OR6N1Q8NGY5 312 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 ZNRF4Q8WWF5 429 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 C22orf15Q8WYQ4 148 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 TSSK2Q96PF2 358 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 DUX5Q96PT3 197 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 RAB1BQ9H0U4 201 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 Q9H521 79 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 MED20Q9H944 212 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 RPRD1BQ9NQG5 326 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 SLC7A10Q9NS82 523 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 DDX28Q9NUL7 540 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 ASB6Q9NWX5 421 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 UBAP1Q9NZ09 502 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 AASSQ9UDR5 926 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 B9D1Q9UPM9 204 aa11.93□□□□□ -0.5
SHKBP1-218ENST00000598907 HEATR1Q9H583 2144 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 PRODHO43272 600 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 SLC16A7O60669 478 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 ENTPD6O75354 484 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 QDPRP09417 244 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 CLUP10909 449 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 SPI1P17947 270 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 CRABP1P29762 137 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 IDH3GP51553 393 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 FOXG1P55316 489 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 LINC01590Q5TEZ4 76 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 FBXW9Q5XUX1 488 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 C1orf229Q6ZS94 237 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 FOXL2NBQ6ZUU3 175 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 BCDIN3DQ7Z5W3 292 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 ZCCHC24Q8N2G6 241 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 OR2T4Q8NH00 348 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 CNIH3Q8TBE1 160 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 ZNF582Q96NG8 517 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 RACGAP1Q9H0H5 632 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 GPR35Q9HC97 309 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 SRA1Q9HD15 236 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 MALT1Q9UDY8 824 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 UGT2A1Q9Y4X1 527 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 PCDHGB5Q9Y5G0 923 aa11.92□□□□□ -0.5
SHKBP1-218ENST00000598907 CCDC182A6NF36 153 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 M0R3G1 203 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 DHHO43323 396 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 KHDRBS3O75525 346 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 PNPP00491 289 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 ADRA2CP18825 462 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 RBMXP38159 391 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 PPOXP50336 477 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 DBPQ10586 325 aaPredicted RBP11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 TMED1Q13445 227 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 MED21Q13503 144 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 SLC35D3Q5M8T2 416 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 DNM1P34Q6PK57 102 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 MEPCEQ7L2J0 689 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 GID4Q8IVV7 300 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 GPR137CQ8N3F9 429 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 OR9Q1Q8NGQ5 310 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 OR51F2Q8NH61 342 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 CLDND2Q8NHS1 167 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 TAF15Q92804 592 aaKnown RBP eCLIP11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 ZNF837Q96EG3 531 aaPredicted RBP11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 CNBD2Q96M20 576 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 Q96MT0 163 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 TEAD3Q99594 435 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 ULBP2Q9BZM5 246 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 B3GAT2Q9NPZ5 323 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 PLCXD1Q9NUJ7 323 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 CLN6Q9NWW5 311 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 DNAJC27Q9NZQ0 273 aa11.91□□□□□ -0.5
SHKBP1-218ENST00000598907 B9A039 149 aa11.9□□□□□ -0.5
SHKBP1-218ENST00000598907 GLCEO94923 617 aa11.9□□□□□ -0.5
SHKBP1-218ENST00000598907 AVPP01185 164 aa11.9□□□□□ -0.5
SHKBP1-218ENST00000598907 GYPBP06028 91 aa11.9□□□□□ -0.5
SHKBP1-218ENST00000598907 ERCC1P07992 297 aaPredicted RBP11.9□□□□□ -0.5
SHKBP1-218ENST00000598907 OR4A8P0C604 315 aa11.9□□□□□ -0.5
SHKBP1-218ENST00000598907 HTR1FP30939 366 aa11.9□□□□□ -0.5
SHKBP1-218ENST00000598907 PYCR1P32322 319 aa11.9□□□□□ -0.5
SHKBP1-218ENST00000598907 CENPAP49450 140 aa11.9□□□□□ -0.5
SHKBP1-218ENST00000598907 CXCR4P61073 352 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms