RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	FKBP6	O75344	327 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	SLC2A10	O95528	541 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	F13B	P05160	661 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	SBK2	P0C263	348 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	IFI30	P13284	250 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	ZNF12	P17014	697 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	FUT4	P22083	530 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	GDI2	P50395	445 aa	Known RBP	11.43	□□□□□ -0.58
SS18-222	ENST00000582792	DAP3	P51398	398 aa	Known RBP	11.43	□□□□□ -0.58
SS18-222	ENST00000582792	PSG4	Q00888	419 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	RPL18	Q07020	188 aa	Known RBP	11.43	□□□□□ -0.58
SS18-222	ENST00000582792	HNRNPA0	Q13151	305 aa	Known RBP	11.43	□□□□□ -0.58
SS18-222	ENST00000582792	MIDN	Q504T8	468 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	ZMAT1	Q5H9K5	638 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	FGD3	Q5JSP0	725 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	RFPL4B	Q6ZWI9	263 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	NRM	Q8IXM6	262 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	KLHL36	Q8N4N3	616 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	SPIC	Q8N5J4	248 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	OR4C15	Q8NGM1	316 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	AKR7L	Q8NHP1	331 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	ABHD4	Q8TB40	342 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	SLC25A28	Q96A46	364 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	SLCO4A1	Q96BD0	722 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	NMD3	Q96D46	503 aa	Known RBP	11.43	□□□□□ -0.58
SS18-222	ENST00000582792	DCLRE1C	Q96SD1	692 aa	Known RBP	11.43	□□□□□ -0.58
SS18-222	ENST00000582792	MRI1	Q9BV20	369 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	REEP1	Q9H902	201 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	SMURF2	Q9HAU4	748 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	C20orf141	Q9NUB4	165 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	DCAF16	Q9NXF7	216 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	UGT2A1	Q9Y4X1	527 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	ARRDC5	A6NEK1	342 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	NPIPB13	A6NJU9	1138 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	NPIPB4	C9JG80	1138 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	CST1	P01037	141 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	FCGR1A	P12314	374 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	OMP	P47874	163 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	SLC6A9	P48067	706 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	SEC61A1	P61619	476 aa	Known RBP	11.42	□□□□□ -0.58
SS18-222	ENST00000582792	PPP1CB	P62140	327 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	TNFAIP6	P98066	277 aa	Predicted RBP	11.42	□□□□□ -0.58
SS18-222	ENST00000582792	SEC23B	Q15437	767 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	SLC9A3R2	Q15599	337 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	TMEM155	Q4W5P6	130 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	TBPL2	Q6SJ96	375 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	ZNF283	Q8N7M2	679 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	OR52J3	Q8NH60	311 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	MSL2	Q9HCI7	577 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	INIP	Q9NRY2	104 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	TMEM106B	Q9NUM4	274 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	STX18	Q9P2W9	335 aa	Known RBP	11.42	□□□□□ -0.58
SS18-222	ENST00000582792	DNAJB9	Q9UBS3	223 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	HIF3A	Q9Y2N7	669 aa		11.42	□□□□□ -0.58
SS18-222	ENST00000582792	PRKDC	P78527	4128 aa	Known RBP	11.41	□□□□□ -0.58
SS18-222	ENST00000582792	IGKV1D-43	A0A0B4J1Z2	117 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	EFCAB9	A8MZ26	197 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792		F5H0A9	414 aa	Predicted RBP	11.41	□□□□□ -0.58
SS18-222	ENST00000582792	PIP5K1C	O60331	668 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	NGF	P01138	241 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	ERVK-25	P63136	954 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	FMOD	Q06828	376 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	CDK5R2	Q13319	367 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	TAF11	Q15544	211 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	SGCA	Q16586	387 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	OCLN	Q16625	522 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	MICA	Q29983	383 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	ARMC4	Q5T2S8	1044 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	FAM27B	Q5VT28	67 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	C1orf94	Q6P1W5	598 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	ZFP1	Q6P2D0	407 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	LEG1	Q6P5S2	330 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	C9orf139	Q6ZV77	190 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	LRRC28	Q86X40	367 aa	Predicted RBP	11.41	□□□□□ -0.58
SS18-222	ENST00000582792	ALDH16A1	Q8IZ83	802 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	GNPDA2	Q8TDQ7	276 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	NSMAF	Q92636	917 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	TAF15	Q92804	592 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
SS18-222	ENST00000582792	NRBF2	Q96F24	287 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	OR2H1	Q9GZK4	316 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	NDEL1	Q9GZM8	345 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	MS4A7	Q9GZW8	240 aa	Predicted RBP	11.41	□□□□□ -0.58
SS18-222	ENST00000582792	WNT5B	Q9H1J7	359 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792	SAMHD1	Q9Y3Z3	626 aa	Known RBP	11.41	□□□□□ -0.58
SS18-222	ENST00000582792	AP4S1	Q9Y587	144 aa		11.41	□□□□□ -0.58
SS18-222	ENST00000582792		A0A0G2JK05	382 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	TIMM8A	O60220	97 aa	Predicted RBP	11.4	□□□□□ -0.58
SS18-222	ENST00000582792	OR10H3	O60404	316 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	PTP4A3	O75365	173 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	CCNB2	O95067	398 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	NR2C1	P13056	603 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	MDK	P21741	143 aa	Predicted RBP	11.4	□□□□□ -0.58
SS18-222	ENST00000582792	FPR3	P25089	353 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	RBMX	P38159	391 aa	Known RBP	11.4	□□□□□ -0.58
SS18-222	ENST00000582792	AQP2	P41181	271 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	MTNR1A	P48039	350 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	GSS	P48637	474 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	ARHGDIA	P52565	204 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	BTG1	P62324	171 aa		11.4	□□□□□ -0.58
SS18-222	ENST00000582792	PAX8	Q06710	450 aa		11.4	□□□□□ -0.58

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