RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 LY6G6FQ5SQ64 297 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 RGS7BPQ6MZT1 257 aaPredicted RBP20.31■□□□□ 0.84
VPS53-211ENST00000571805 C11orf40Q8WZ69 217 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 FGGYQ96C11 551 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 FOXRED1Q96CU9 486 aaPredicted RBP20.31■□□□□ 0.84
VPS53-211ENST00000571805 ARL6Q9H0F7 186 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 KLHL13Q9P2N7 655 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 hCG_1807616A0A1W2PRN6 198 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 ZNF736B4DX44 427 aaPredicted RBP20.3■□□□□ 0.84
VPS53-211ENST00000571805 B8ZZF3 427 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 EIF1AYO14602 144 aaKnown RBP20.3■□□□□ 0.84
VPS53-211ENST00000571805 CYB5AP00167 134 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 NMBP08949 121 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 RAB6AP20340 208 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 ATPAF1Q5TC12 328 aaPredicted RBP20.3■□□□□ 0.84
VPS53-211ENST00000571805 ZNF574Q6ZN55 896 aaPredicted RBP20.3■□□□□ 0.84
VPS53-211ENST00000571805 GPAT4Q86UL3 456 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 C12orf45Q8N5I9 185 aaPredicted RBP20.3■□□□□ 0.84
VPS53-211ENST00000571805 DNASE2BQ8WZ79 361 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 AQP3Q92482 292 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 C5orf34Q96MH7 638 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 EMC6Q9BV81 110 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 CNTD2Q9H8S5 307 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 TMEM235A6NFC5 223 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 TTRP02766 147 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 HEXBP07686 556 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 C11orf88Q6PI97 169 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 RABEPKQ7Z6M1 372 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 PAQR4Q8N4S7 273 aaPredicted RBP20.3■□□□□ 0.84
VPS53-211ENST00000571805 SLC7A5P2Q9GIP4 190 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 SERINC1Q9NRX5 453 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 ADAMTS9Q9P2N4 1935 aa20.3■□□□□ 0.84
VPS53-211ENST00000571805 PHF3Q92576 2039 aaKnown RBP20.29■□□□□ 0.84
VPS53-211ENST00000571805 H3BML4 177 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 BCAT2O15382 392 aaPredicted RBP20.29■□□□□ 0.84
VPS53-211ENST00000571805 ZNF28P17035 718 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 AFF3P51826 1226 aaKnown RBP20.29■□□□□ 0.84
VPS53-211ENST00000571805 BIDP55957 195 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 ALKAL2Q6UX46 152 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 TMED4Q7Z7H5 227 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 NAXDQ8IW45 347 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 BPIFB2Q8N4F0 458 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 ACBD4Q8NC06 268 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 OR13C8Q8NGS7 320 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 SCARB1Q8WTV0 552 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 SLAMF6Q96DU3 332 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 SLC6A7Q99884 636 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 B3GNT4Q9C0J1 378 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 MED9Q9NWA0 146 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 B3GAT1Q9P2W7 334 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 CYB5R1Q9UHQ9 305 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 B3GALT5Q9Y2C3 310 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 MFSD2BA6NFX1 497 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 VSTM2BA6NLU5 285 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 RAB27BO00194 218 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 GMFBP60983 142 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 SORDQ00796 357 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 ZNF260Q3ZCT1 412 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 SLC38A6Q8IZM9 456 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 OR10S1Q8NGN2 331 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 WDR77Q9BQA1 342 aaPredicted RBP20.29■□□□□ 0.84
VPS53-211ENST00000571805 MRPL13Q9BYD1 178 aaKnown RBP20.29■□□□□ 0.84
VPS53-211ENST00000571805 ALKBH4Q9NXW9 302 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 RAB22AQ9UL26 194 aa20.29■□□□□ 0.84
VPS53-211ENST00000571805 TIAF1O95411 115 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 BDKRB2P30411 391 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 NKAIN1Q4KMZ8 207 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 ADAT3Q96EY9 351 aaPredicted RBP20.28■□□□□ 0.84
VPS53-211ENST00000571805 CXorf58Q96LI9 332 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 ATXN7L1Q9ULK2 861 aaPredicted RBP20.28■□□□□ 0.84
VPS53-211ENST00000571805 TRAV14DV4A0A0A6YYC5 116 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 TRBV11-1A0A0K0K1C0 115 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 A0A1W2PNV4 684 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 RFPL4AA6NLU0 287 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 RFPL4AL1F8VTS6 287 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 RPA2P15927 270 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 NAGAP17050 411 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 HSD11B1P28845 292 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 QRFPP83859 136 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 GSG1LQ6UXU4 331 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 OR4S1Q8NGB4 309 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 OR52N4Q8NGI2 321 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 OR1J2Q8NGS2 313 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 EDAQ92838 391 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 C1QTNF6Q9BXI9 259 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 SDHAF2Q9NX18 166 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 FARSAQ9Y285 508 aaKnown RBP20.28■□□□□ 0.84
VPS53-211ENST00000571805 KCNMB2Q9Y691 235 aa20.28■□□□□ 0.84
VPS53-211ENST00000571805 OR14I1A6ND48 311 aa20.27■□□□□ 0.84
VPS53-211ENST00000571805 CAPZA1P52907 286 aa20.27■□□□□ 0.84
VPS53-211ENST00000571805 GPR85P60893 370 aa20.27■□□□□ 0.84
VPS53-211ENST00000571805 UNC119Q13432 240 aa20.27■□□□□ 0.84
VPS53-211ENST00000571805 SHBQ15464 509 aa20.27■□□□□ 0.84
VPS53-211ENST00000571805 SLC25A53Q5H9E4 307 aa20.27■□□□□ 0.84
VPS53-211ENST00000571805 TMEM71Q6P5X7 295 aa20.27■□□□□ 0.84
VPS53-211ENST00000571805 PAPD4Q6PIY7 484 aaKnown RBP20.27■□□□□ 0.84
VPS53-211ENST00000571805 COQ8AQ8NI60 647 aa20.27■□□□□ 0.84
VPS53-211ENST00000571805 PBOV1Q9GZY1 135 aa20.27■□□□□ 0.84
VPS53-211ENST00000571805 RPH3AQ9Y2J0 694 aaPredicted RBP20.27■□□□□ 0.84
VPS53-211ENST00000571805 MRPS17Q9Y2R5 130 aaKnown RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms