RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 RPS27P42677 84 aaKnown RBP11.71□□□□□ -0.53
SHMT2-219ENST00000555563 MAGEB1P43366 347 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 ATP6AP1Q15904 470 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 SLC27A4Q6P1M0 643 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 TMEM154Q6P9G4 183 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 ATG16L2Q8NAA4 619 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 OR6K6Q8NGW6 343 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 PITX2Q99697 317 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 CDADC1Q9BWV3 514 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 HCAR1Q9BXC0 346 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 MED20Q9H944 212 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 WDR76Q9H967 626 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 PNRC2Q9NPJ4 139 aaKnown RBP11.71□□□□□ -0.53
SHMT2-219ENST00000555563 KIF17Q9P2E2 1029 aa11.71□□□□□ -0.53
SHMT2-219ENST00000555563 CD5LO43866 347 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 CIB2O75838 187 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 MT-ND5P03915 603 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 ZNF823P16415 610 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 ZNF81P51508 661 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 MMP15P51511 669 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 CCL8P80075 99 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 PSG7Q13046 419 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 RIN1Q13671 783 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 MOGQ16653 247 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 PCGF3Q3KNV8 242 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 KRTAP27-1Q3LI81 207 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 FAHD1Q6P587 224 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 CCDC121Q6ZUS5 278 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 ZNF511Q8NB15 262 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 OR10S1Q8NGN2 331 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 OR2AJ1Q8NGZ0 328 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 YIPF5Q969M3 257 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 NRBF2Q96F24 287 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 DUS3LQ96G46 650 aaKnown RBP11.7□□□□□ -0.54
SHMT2-219ENST00000555563 MAP6Q96JE9 813 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 DCLRE1CQ96SD1 692 aaKnown RBP11.7□□□□□ -0.54
SHMT2-219ENST00000555563 ATF6BQ99941 703 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 STARD10Q9Y365 291 aa11.7□□□□□ -0.54
SHMT2-219ENST00000555563 PLSCR5A0PG75 271 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 INAFM1C9JVW0 142 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 J3QW42 95 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 TIMM8AO60220 97 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-219ENST00000555563 IGHV1-46P01743 117 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 SPARCP09486 303 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 FMO3P31513 532 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 RGS6P49758 472 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 GINS1Q14691 196 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 RSPO1Q2MKA7 263 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-219ENST00000555563 LINC01590Q5TEZ4 76 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 ACSM5Q6NUN0 579 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 ZNF540Q8NDQ6 660 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 OR5K1Q8NHB7 308 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 DNAJC9Q8WXX5 260 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 RDH5Q92781 318 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 APOBEC3DQ96AK3 386 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-219ENST00000555563 OTULINQ96BN8 352 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 COG8Q96MW5 612 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 CHODLQ9H9P2 273 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 PAPOLBQ9NRJ5 636 aaKnown RBP11.69□□□□□ -0.54
SHMT2-219ENST00000555563 NKIRAS2Q9NYR9 191 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 PTTG3PQ9NZH4 202 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 CGGBP1Q9UFW8 167 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-219ENST00000555563 PURGQ9UJV8 347 aaKnown RBP11.69□□□□□ -0.54
SHMT2-219ENST00000555563 AP4S1Q9Y587 144 aa11.69□□□□□ -0.54
SHMT2-219ENST00000555563 FN1P02751 2386 aaKnown RBP11.68□□□□□ -0.54
SHMT2-219ENST00000555563 CSPG4Q6UVK1 2322 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 LRP5LA4QPB2 252 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 SURF4O15260 269 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 TPD52L2O43399 206 aaKnown RBP11.68□□□□□ -0.54
SHMT2-219ENST00000555563 SPRY3O43610 288 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 CDC14BO60729 498 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 RP2O75695 350 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 ACSM4P0C7M7 580 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 IGHV4-31P0DP07 118 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 ZNF16P17020 682 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-219ENST00000555563 ZNF23P17027 643 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 KITLGP21583 273 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 PAICSP22234 425 aaKnown RBP11.68□□□□□ -0.54
SHMT2-219ENST00000555563 ACHEP22303 614 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 TUBG1P23258 451 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 COL8A2P25067 703 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 FASP25445 335 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 ENTPD1P49961 510 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 DAPP51397 102 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 MRPS11P82912 194 aaKnown RBP11.68□□□□□ -0.54
SHMT2-219ENST00000555563 CDK5Q00535 292 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 ECH1Q13011 328 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 TRIP10Q15642 601 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 TSTQ16762 297 aaKnown RBP11.68□□□□□ -0.54
SHMT2-219ENST00000555563 PCK2Q16822 640 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 ZMAT1Q5H9K5 638 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 TMEM236Q5W0B7 351 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 PLBD1Q6P4A8 553 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 DCXRQ7Z4W1 244 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 AMIGO2Q86SJ2 522 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 CMBLQ96DG6 245 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 SAP30LQ9HAJ7 183 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 SLC25A19Q9HC21 320 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 MSL2Q9HCI7 577 aa11.68□□□□□ -0.54
SHMT2-219ENST00000555563 TUBG2Q9NRH3 451 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms