RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 HLA-AP01891 365 aaKnown RBP6.7□□□□□ -1.34
LIMA1-213ENST00000552720 FGF2P09038 288 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 CD38P28907 300 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 FBXW4P57775 412 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 SLC26A5P58743 744 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 POU3F1Q03052 451 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-213ENST00000552720 C3orf33Q6P1S2 294 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ARSKQ6UWY0 536 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 RHOUQ7L0Q8 258 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 HDDC2Q7Z4H3 204 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 GKN2Q86XP6 184 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 BEST3Q8N1M1 668 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 PAQR4Q8N4S7 273 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-213ENST00000552720 OR52N4Q8NGI2 321 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 OR1N1Q8NGS0 311 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 FGGYQ96C11 551 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 SPACA5Q96QH8 159 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 SOX7Q9BT81 388 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 POTEKPQ9BYX7 375 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 CNTD2Q9H8S5 307 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF304Q9HCX3 659 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 NOP16Q9Y3C1 178 aaKnown RBP6.7□□□□□ -1.34
LIMA1-213ENST00000552720 R4GMQ9 66 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 MUC3AQ02505 3323 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 A0A1W2PQD3 144 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 A0A1W2PR77 199 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 OR5H14A6NHG9 310 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 H3BML4 177 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 RPA2P15927 270 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF823P16415 610 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 FBLP22087 321 aaKnown RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 AVPR2P30518 371 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 CALCRP30988 508 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 GMFBP60983 142 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 UNC119Q13432 240 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 CDNFQ49AH0 187 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 PAPD4Q6PIY7 484 aaKnown RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 CFAP77Q6ZQR2 320 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 SLC29A4Q7RTT9 530 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 OVCH2Q7RTZ1 564 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 GRINAQ7Z429 371 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 FJX1Q86VR8 437 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 LYPD6Q86Y78 171 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 NAXDQ8IW45 347 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 PDZD9Q8IXQ8 264 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 OR6K3Q8NGY3 331 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 ASB10Q8WXI3 467 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 ST8SIA2Q92186 375 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 ADAT3Q96EY9 351 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 ZC3H10Q96K80 434 aaKnown RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 DPYSL5Q9BPU6 564 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 TMEM185BQ9H7F4 350 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 SLC17A5Q9NRA2 495 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 COPS7AQ9UBW8 275 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 GDF2Q9UK05 429 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 OR14I1A6ND48 311 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 RHPN2P1A8MT19 583 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 FAM25EA8MYX2 175 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 RAB27BO00194 218 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 HPP00738 406 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 FSTP19883 344 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 CD34P28906 385 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 ARL4DP49703 201 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 PNLIPRP2P54317 469 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 ATP1B3P54709 279 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 CXADRP78310 365 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 PPP1R1AQ13522 171 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 TAF13Q15543 124 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 MPPED2Q15777 294 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 PTCRAQ6ISU1 281 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 TRAPPC6BQ86SZ2 158 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 SLC51BQ86UW2 128 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 C17orf82Q86X59 251 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF441Q8N8Z8 693 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 CHST4Q8NCG5 386 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 SMRP1Q8NCR6 262 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 OR5M8Q8NGP6 311 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 OR2I1PQ8NGU4 316 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 DAZLQ92904 295 aaKnown RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 MRPS24Q96EL2 167 aaKnown RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 NICN1Q9BSH3 213 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 CST11Q9H112 138 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 ALX4Q9H161 411 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-213ENST00000552720 MED9Q9NWA0 146 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 SUSD2Q9UGT4 822 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 PLEKHA6Q9Y2H5 1048 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 COL6A3P12111 3177 aa6.69□□□□□ -1.34
LIMA1-213ENST00000552720 PI4KAP42356 2102 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 A0A1B0GTI1 187 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 TTLL8A6PVC2 850 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 D6RAR5 112 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 TO15178 435 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 AQP8O94778 261 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 IGHMP01871 453 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 APOC3P02656 99 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 TTRP02766 147 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 CD74P04233 296 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms