RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 CELSR2Q9HCU4 2923 aa3.3□□□□□ -1.88
LIMA1-205ENST00000550592 CROCCQ5TZA2 2017 aa3.3□□□□□ -1.88
LIMA1-205ENST00000550592 COL1A2P08123 1366 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 PTPRDP23468 1912 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 IGLV3-22A0A075B6J6 115 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 CCDC169A6NNP5 214 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 C12orf77C9JDV5 145 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 AP3B1O00203 1094 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 UPK3AO75631 287 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 C1orf105O95561 183 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 TMEM50AO95807 157 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 POLR2MP0CAP2 368 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 MCF2P10911 925 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 TOP1P11387 765 aaKnown RBP3.29□□□□□ -1.88
LIMA1-205ENST00000550592 ABOP16442 354 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 KITLGP21583 273 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 FMO3P31513 532 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 CASP14P31944 242 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 BTCP35070 178 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 CCR2P41597 374 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 ILKQ13418 452 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 CCDC183Q5T5S1 534 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 KDM7AQ6ZMT4 941 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 LRRC74BQ6ZQY2 392 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 CDH26Q8IXH8 852 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 AKR7LQ8NHP1 331 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 RNF138Q8WVD3 245 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 MBOAT4Q96T53 435 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 NRTNQ99748 197 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 RASL11BQ9BPW5 248 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 PELOQ9BRX2 385 aaKnown RBP3.29□□□□□ -1.88
LIMA1-205ENST00000550592 ROGDIQ9GZN7 287 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 ASB8Q9H765 288 aa3.29□□□□□ -1.88
LIMA1-205ENST00000550592 DOCK5Q9H7D0 1870 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 STAB1Q9NY15 2570 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 PDZD2O15018 2839 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 CSMD1Q96PZ7 3565 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 A0A0G2JN53 185 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 WI2-2373I1.2A0A1W2PRP0 233 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 RBMY1BA6NDE4 496 aaKnown RBP3.28□□□□□ -1.88
LIMA1-205ENST00000550592 RBMY1EA6NEQ0 496 aaKnown RBP3.28□□□□□ -1.88
LIMA1-205ENST00000550592 GJE1A6NN92 205 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 ZNF716A6NP11 495 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 H0Y9J4 135 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 TRAF3IP2O43734 574 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-205ENST00000550592 NMT2O60551 498 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 CST1P01037 141 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 IGHV2-5P01817 119 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 RBMY1DP0C7P1 496 aaKnown RBP3.28□□□□□ -1.88
LIMA1-205ENST00000550592 ZNF735P0CB33 412 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 RBMY1A1P0DJD3 496 aaKnown RBP3.28□□□□□ -1.88
LIMA1-205ENST00000550592 NUDT1P36639 197 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 TDGF1P3P51864 188 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 PLP1P60201 277 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 PDIA2Q13087 525 aaKnown RBP3.28□□□□□ -1.88
LIMA1-205ENST00000550592 C2orf83Q53S99 150 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 ZNF461Q8TAF7 563 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 RNF139Q8WU17 664 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 NDRG1Q92597 394 aaKnown RBP3.28□□□□□ -1.88
LIMA1-205ENST00000550592 CNDP1Q96KN2 507 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 SORT1Q99523 831 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 DEFB127Q9H1M4 99 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 SIAEQ9HAT2 523 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 ABCB10Q9NRK6 738 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 KLHL28Q9NXS3 571 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 SLC2A8Q9NY64 477 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 CALYQ9NYX4 217 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 SPATA7Q9P0W8 599 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 SLC25A15Q9Y619 301 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 CRYBG3Q68DQ2 2970 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 PLXND1Q9Y4D7 1925 aa3.28□□□□□ -1.88
LIMA1-205ENST00000550592 BOD1L1Q8NFC6 3051 aa3.28□□□□□ -1.89
LIMA1-205ENST00000550592 MYO18AQ92614 2054 aaKnown RBP3.28□□□□□ -1.89
LIMA1-205ENST00000550592 NOTCH1P46531 2555 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 NFASCO94856 1347 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 SPENQ96T58 3664 aaKnown RBP3.27□□□□□ -1.89
LIMA1-205ENST00000550592 CELSR1Q9NYQ6 3014 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 IGHV1OR15-9A0A0B4J2B8 117 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 KIR2DL5BA0A0G2JN68 375 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 KIR2DL5BA0A0G2JPC4 375 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 HEATR9A2RTY3 570 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 C12orf71A8MTZ7 269 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 DFNA5O60443 496 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 KLF8O95600 359 aaPredicted RBP3.27□□□□□ -1.89
LIMA1-205ENST00000550592 INSP01308 110 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 IGHV4-34P06331 123 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 CRYGBP07316 175 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 KRT7P08729 469 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 CT62P0C5K7 136 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 CD99P14209 185 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 U2AF2P26368 475 aaKnown RBP eCLIP3.27□□□□□ -1.89
LIMA1-205ENST00000550592 UQCRFS1P47985 274 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 NPBWR2P48146 333 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 SUCLG1P53597 346 aaKnown RBP3.27□□□□□ -1.89
LIMA1-205ENST00000550592 FBXW4P57775 412 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 CKAP4Q07065 602 aaKnown RBP3.27□□□□□ -1.89
LIMA1-205ENST00000550592 DNAJC3Q13217 504 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 CYTH1Q15438 398 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 TRIM40Q6P9F5 258 aa3.27□□□□□ -1.89
LIMA1-205ENST00000550592 ACP7Q6ZNF0 438 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms