RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	DDAH2	O95865	285 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	CRYBA1	P05813	215 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	FGF5	P12034	268 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	ADRA2C	P18825	462 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	ELAVL1	Q15717	326 aa	Known RBP	13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	ZNF684	Q5T5D7	378 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	LIPN	Q5VXI9	398 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	LCN10	Q6JVE6	187 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	SUMF1	Q8NBK3	374 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	C2CD4C	Q8TF44	421 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	CRB3	Q9BUF7	120 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	TGIF2	Q9GZN2	237 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	SYT4	Q9H2B2	425 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	NIT2	Q9NQR4	276 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	ARGFX	A6NJG6	315 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	ZNF879	B4DU55	563 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	ARPC3	O15145	178 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	DOK2	O60496	412 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	GLCE	O94923	617 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	MGMT	P16455	207 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	ZNF117	Q03924	483 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	IL11RA	Q14626	422 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	DPY19L4	Q7Z388	723 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	EXD3	Q8N9H8	876 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	TMEM185A	Q8NFB2	350 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	OR52I2	Q8NH67	350 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	ZNF563	Q8TA94	476 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	ZNF721	Q8TF20	911 aa		13.45	□□□□□ -0.26
CHFR-223	ENST00000544268	OTOGL	Q3ZCN5	2332 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	TRAV8-7	A0A075B6U6	113 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	TRBV23-1	A0A0A0MS06	115 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	EIF4E2	O60573	245 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	UPK3A	O75631	287 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	IGKV3-11	P04433	115 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	ZNF28	P17035	718 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	PTAFR	P25105	342 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	P2RY4	P51582	365 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	H2BFS	P57053	126 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	SPEM2	Q0P670	501 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	IL10RA	Q13651	578 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	WBP2NL	Q6ICG8	309 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	PLPP5	Q8NEB5	264 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	GTF3A	Q92664	365 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	EDEM2	Q9BV94	578 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	UBQLN4	Q9NRR5	601 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	PRODH2	Q9UF12	536 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	COL27A1	Q8IZC6	1860 aa	Predicted RBP	13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	UBE2QL1	A1L167	161 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	C2orf72	A6NCS6	295 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	IFITM5	A6NNB3	132 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268		F5H5P2	479 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	GABARAP	H6UMI1	98 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	SCD	O00767	359 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	HCRTR2	O43614	444 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	ARL6IP5	O75915	188 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	ASAH2B	P0C7U1	165 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	PTGFR	P43088	359 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	OLFML2A	Q68BL7	652 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	SLC35D2	Q76EJ3	337 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	OR6N2	Q8NGY6	317 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	SLC25A36	Q96CQ1	311 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	ADAD1	Q96M93	576 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	GINS4	Q9BRT9	223 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	NUDT9	Q9BW91	350 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	ZFP57	Q9NU63	452 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	IKZF2	Q9UKS7	526 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	HIF3A	Q9Y2N7	669 aa		13.44	□□□□□ -0.26
CHFR-223	ENST00000544268	EP300	Q09472	2414 aa	Predicted RBP	13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	IGHV3-20	A0A0C4DH32	117 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	ZNF264	O43296	627 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	KHDRBS3	O75525	346 aa	Known RBP	13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	WNT11	O96014	354 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	MAS1	P04201	325 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	CD14	P08571	375 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	DPP4	P27487	766 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	ITPKB	P27987	946 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	SNTB1	Q13884	538 aa	Known RBP	13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	GUCA2B	Q16661	112 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	LINC00303	Q3SY05	128 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	UNQ9370/PRO34162	Q6UXP9	181 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	OVCH1	Q7RTY7	1134 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	SKA3	Q8IX90	412 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	OR5M1	Q8NGP8	315 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	THAP6	Q8TBB0	222 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	ZNF281	Q9Y2X9	895 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	MED12	Q93074	2177 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	TMEM238L	A0A1B0GVL6	79 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	NDUFB6	O95139	128 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	NUDT14	O95848	222 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	FBXO45	P0C2W1	286 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	ZNF35	P13682	527 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	CAPZA1	P52907	286 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	ART1	P52961	327 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	CLDN6	P56747	220 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	PRPS1	P60891	318 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	UBE2NL	Q5JXB2	153 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	C9orf40	Q8IXQ3	194 aa		13.43	□□□□□ -0.26
CHFR-223	ENST00000544268	KDM8	Q8N371	416 aa		13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms