RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 AP1ARQ63HQ0 302 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 NPSR1Q6W5P4 371 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 TAS2R42Q7RTR8 314 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 TCEAL3Q969E4 200 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 TMEM230Q96A57 120 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 EEF1AKMT3Q96AZ1 226 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 RASD2Q96D21 266 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 NUP58Q9BVL2 599 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 ZNF717Q9BY31 904 aaPredicted RBP2.16□□□□□ -2.06
CD44-215ENST00000525241 C8orf17Q9NRJ1 99 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 HPCAL4Q9UM19 191 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 PALLDQ8WX93 1383 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 IGKV1-8A0A0C4DH67 115 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 ZNF233A6NK53 670 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 H7C417 338 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 K7EMT4 169 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 SIRPB1O00241 398 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 CHST1O43916 411 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 SEMA3DO95025 777 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 PABPC4LP0CB38 370 aaKnown RBP2.15□□□□□ -2.07
CD44-215ENST00000525241 CT45A6P0DMU7 189 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 CT45A5P0DMU8 189 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 CT45A7P0DMV0 189 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 PTMSP20962 102 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 U2AF2P26368 475 aaKnown RBP eCLIP2.15□□□□□ -2.07
CD44-215ENST00000525241 TAS2R31P59538 309 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 CDK5Q00535 292 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 IFT88Q13099 833 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 RNASE13Q5GAN3 156 aaKnown RBP2.15□□□□□ -2.07
CD44-215ENST00000525241 CT45A1Q5HYN5 189 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 C22orf42Q6IC83 251 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 MIR7-3HGQ8N6C7 128 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 CHST4Q8NCG5 386 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 OR13G1Q8NGZ3 307 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 CT45A3Q8NHU0 189 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 NUBPLQ8TB37 319 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 RAB3IL1Q8TBN0 382 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 ANKRD60Q9BZ19 345 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 C1orf198Q9H425 327 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 ANKRA2Q9H9E1 313 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 FBXO6Q9NRD1 293 aaPredicted RBP2.15□□□□□ -2.07
CD44-215ENST00000525241 MTFP1Q9UDX5 166 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 HIVEP2P31629 2446 aa2.15□□□□□ -2.07
CD44-215ENST00000525241 SMCO3A2RU48 225 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 GOLGA8OA6NCC3 632 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 NCBP2LA6PVI3 153 aaKnown RBP2.14□□□□□ -2.07
CD44-215ENST00000525241 GOLGA8NF8WBI6 632 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 LGALS9O00182 355 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 NDUFAB1O14561 156 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 SCAMP2O15127 329 aaKnown RBP2.14□□□□□ -2.07
CD44-215ENST00000525241 RNF13O43567 381 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 EIF4E2O60573 245 aaKnown RBP2.14□□□□□ -2.07
CD44-215ENST00000525241 SLC22A5O76082 557 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 AQP8O94778 261 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 IGHDP01880 384 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 HLA-DQB1P01920 261 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 ARG1P05089 322 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 IL1RNP18510 177 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 LOXP28300 417 aaPredicted RBP2.14□□□□□ -2.07
CD44-215ENST00000525241 RRM2P31350 389 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 GFERP55789 205 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 RAB10P61026 200 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 CCNA1P78396 465 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 SELENBP1Q13228 472 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 KIR2DS1Q14954 304 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 IGFBP7Q16270 282 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 SLC16A14Q7RTX9 510 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 TMEM256Q8N2U0 113 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 OR52E2Q8NGJ4 325 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 OR4A4PQ8NGN8 299 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 OR9A2Q8NGT5 310 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 DCPSQ96C86 337 aaKnown RBP2.14□□□□□ -2.07
CD44-215ENST00000525241 RBBP8Q99708 897 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 TBL1YQ9BQ87 522 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 SAMD10Q9BYL1 202 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 MTCH1Q9NZJ7 389 aa2.14□□□□□ -2.07
CD44-215ENST00000525241 CCDC59Q9P031 241 aaKnown RBP2.14□□□□□ -2.07
CD44-215ENST00000525241 TRAV6A0A075B6T7 132 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 TRAV19A0A0A6YYK7 116 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 TRBV9A0A0B4J1U6 114 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 TRBV11-1A0A0K0K1C0 115 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 CENPVL3A0A0U1RRI6 287 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 MPHOSPH10O00566 681 aaKnown RBP2.13□□□□□ -2.07
CD44-215ENST00000525241 EIF3HO15372 352 aaKnown RBP eCLIP2.13□□□□□ -2.07
CD44-215ENST00000525241 NVLO15381 856 aaKnown RBP2.13□□□□□ -2.07
CD44-215ENST00000525241 CHST10O43529 356 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 FLOT1O75955 427 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 IGLV3-25P01717 112 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 ME2P23368 584 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 EIF3EP60228 445 aaKnown RBP2.13□□□□□ -2.07
CD44-215ENST00000525241 RPS23P62266 143 aaKnown RBP2.13□□□□□ -2.07
CD44-215ENST00000525241 SEMG2Q02383 582 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 TGM3Q08188 693 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 PGGHGQ32M88 737 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 PRAMEF20Q5VT98 475 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 ADNP2Q6IQ32 1131 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 CMC1Q7Z7K0 106 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 CDH26Q8IXH8 852 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 LRRC52Q8N7C0 313 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 ST20-AS1Q8NBB2 130 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms