RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 SURF4O15260 269 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 SLC16A7O60669 478 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 RNASE1P07998 156 aaKnown RBP10.59□□□□□ -0.71
SKA1-205ENST00000494518 MDKP21741 143 aaPredicted RBP10.59□□□□□ -0.71
SKA1-205ENST00000494518 AQP6Q13520 282 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 MAPRE2Q15555 327 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 MEP1BQ16820 701 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 ZBED5Q49AG3 693 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 CGB2Q6NT52 195 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 MBOAT2Q6ZWT7 520 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 FAM122BQ7Z309 247 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 MOGAT3Q86VF5 341 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 PCYOX1LQ8NBM8 494 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 C19orf18Q8NEA5 215 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 OR1F12Q8NHA8 337 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 PTP4A1Q93096 173 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 SLC25A28Q96A46 364 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 HSH2DQ96JZ2 352 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 MEGF10Q96KG7 1140 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 SSBP3Q9BWW4 388 aaPredicted RBP10.59□□□□□ -0.71
SKA1-205ENST00000494518 ZNF696Q9H7X3 374 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 FGFR1OP2Q9NVK5 253 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 ARMCX1Q9P291 453 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 POLR1DQ9Y2S0 133 aa10.59□□□□□ -0.71
SKA1-205ENST00000494518 POLR3KQ9Y2Y1 108 aaPredicted RBP10.59□□□□□ -0.71
SKA1-205ENST00000494518 F5H5P2 479 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 CXCR6O00574 342 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 GSTA4O15217 222 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 MLNRO43193 412 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 KHDRBS3O75525 346 aaKnown RBP10.58□□□□□ -0.72
SKA1-205ENST00000494518 SERPINA1P01009 418 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 NPPAP01160 153 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 WNT2P09544 360 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 TROVE2P10155 538 aaKnown RBP eCLIP10.58□□□□□ -0.72
SKA1-205ENST00000494518 GNB2P62879 340 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 HOXA4Q00056 320 aaPredicted RBP10.58□□□□□ -0.72
SKA1-205ENST00000494518 LIPEQ05469 1076 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 PAX8Q06710 450 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 IFI44LQ53G44 452 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 CORO6Q6QEF8 472 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 BRD3OSQ6XYD6 125 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 PTCHD4Q6ZW05 846 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 FKBP9P1Q75LS8 142 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 SPATC1Q76KD6 591 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 KLBQ86Z14 1044 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 GLB1L2Q8IW92 636 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 MUC20Q8N307 709 aaPredicted RBP10.58□□□□□ -0.72
SKA1-205ENST00000494518 TSSK2Q96PF2 358 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 TMEM246Q9BRR3 403 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 TMEM165Q9HC07 324 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 LRCH1Q9Y2L9 728 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 CAPN7Q9Y6W3 813 aa10.58□□□□□ -0.72
SKA1-205ENST00000494518 IGHV2-70DA0A0C4DH43 119 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 HTR3EA5X5Y0 456 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 HLA-DPB1P04440 258 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 RAC2P15153 192 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 NCK1P16333 377 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 DEFA6Q01524 100 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 PAX2Q02962 417 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 SRSF4Q08170 494 aaKnown RBP10.57□□□□□ -0.72
SKA1-205ENST00000494518 ANKDD1AQ495B1 522 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 FGD3Q5JSP0 725 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 SLC27A4Q6P1M0 643 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 BTNL3Q6UXE8 466 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 TREML4Q6UXN2 200 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 TMPRSS11FQ6ZWK6 438 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 RRM2BQ7LG56 351 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 HDXQ7Z353 690 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 SLC15A3Q8IY34 581 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 RNF113BQ8IZP6 322 aaKnown RBP10.57□□□□□ -0.72
SKA1-205ENST00000494518 OR8G5Q8NG78 346 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 WACQ9BTA9 647 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 NUAK2Q9H093 628 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 ZMAT3Q9HA38 289 aaKnown RBP10.57□□□□□ -0.72
SKA1-205ENST00000494518 IER3IP1Q9Y5U9 82 aa10.57□□□□□ -0.72
SKA1-205ENST00000494518 NME4O00746 187 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 HOXA3O43365 443 aaPredicted RBP10.56□□□□□ -0.72
SKA1-205ENST00000494518 DIRAS1O95057 198 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 NDUFB2O95178 105 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 TUBG1P23258 451 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 SDHAP31040 664 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 PMELP40967 661 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 CDKN2AP42771 156 aaKnown RBP10.56□□□□□ -0.72
SKA1-205ENST00000494518 MTNR1AP48039 350 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 PITPNBP48739 271 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 SRP9P49458 86 aaKnown RBP10.56□□□□□ -0.72
SKA1-205ENST00000494518 SLC7A2P52569 658 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 LSM6P62312 80 aaKnown RBP10.56□□□□□ -0.72
SKA1-205ENST00000494518 IL13RA1P78552 427 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 PRAMEF6Q5VXH4 476 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 RUSC1-AS1Q66K80 236 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 LYPD2Q6UXB3 125 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 FBXW12Q6X9E4 464 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 CBLL1Q75N03 491 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 TSEN54Q7Z6J9 526 aaKnown RBP10.56□□□□□ -0.72
SKA1-205ENST00000494518 LINC00346Q8IVM7 164 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 OR8B3Q8NGG8 313 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 OR13G1Q8NGZ3 307 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 SLC7A13Q8TCU3 470 aa10.56□□□□□ -0.72
SKA1-205ENST00000494518 RAB40AQ8WXH6 277 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms