RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 AP3S1Q92572 193 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 SPTSSAQ969W0 71 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 SLC25A46Q96AG3 418 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 ZNF837Q96EG3 531 aaPredicted RBP11.27□□□□□ -0.61
VPS13D-205ENST00000473099 ATF6BQ99941 703 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 SLIRPQ9GZT3 109 aaKnown RBP11.27□□□□□ -0.61
VPS13D-205ENST00000473099 NXF2Q9GZY0 626 aaKnown RBP11.27□□□□□ -0.61
VPS13D-205ENST00000473099 RNF167Q9H6Y7 350 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 SP140LQ9H930 580 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 PNRC2Q9NPJ4 139 aaKnown RBP11.27□□□□□ -0.61
VPS13D-205ENST00000473099 CRNNQ9UBG3 495 aaPredicted RBP11.27□□□□□ -0.61
VPS13D-205ENST00000473099 OR52A1Q9UKL2 312 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 TIMM10BQ9Y5J6 103 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 MYO7BQ6PIF6 2116 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 MGAQ8IWI9 3026 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 ATRXP46100 2492 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 A0A075B6Q4 140 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 TRBV5-5A0A0J9YX44 114 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 RER1O15258 196 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 SGCEO43556 437 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 TMEM127O75204 238 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 WNT11O96014 354 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 TPOP07202 933 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 B4GALT1P15291 398 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 ABOP16442 354 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 ACHEP22303 614 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 CALRP27797 417 aaKnown RBP11.26□□□□□ -0.61
VPS13D-205ENST00000473099 SDC2P34741 201 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 TGFBR1P36897 503 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 RPS19P39019 145 aaKnown RBP11.26□□□□□ -0.61
VPS13D-205ENST00000473099 KIR3DL2P43630 455 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 TDGF1P3P51864 188 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 PER3P56645 1201 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 RPS11P62280 158 aaKnown RBP eCLIP11.26□□□□□ -0.61
VPS13D-205ENST00000473099 ARF1P84077 181 aaKnown RBP11.26□□□□□ -0.61
VPS13D-205ENST00000473099 FAPQ12884 760 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 HSD17B12Q53GQ0 312 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 C1orf185Q5T7R7 199 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 IL17RDQ8NFM7 739 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 NANOS1Q8WY41 292 aaKnown RBP11.26□□□□□ -0.61
VPS13D-205ENST00000473099 SLX1AQ9BQ83 275 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 SLITRK2Q9H156 845 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 FAM206AQ9NX38 181 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 PLEK2Q9NYT0 353 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 NUFIP1Q9UHK0 495 aaKnown RBP11.26□□□□□ -0.61
VPS13D-205ENST00000473099 HHLA2Q9UM44 414 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 GTF2A1LQ9UNN4 478 aa11.26□□□□□ -0.61
VPS13D-205ENST00000473099 IQCMA0A1B0GVH7 501 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 PRRG2O14669 202 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 PDCD5O14737 125 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 LRRTM2O43300 516 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 PNPP00491 289 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 CD2P06729 351 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 OCM2P0CE71 109 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 COX5BP10606 129 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 HOXB1P14653 301 aaPredicted RBP11.25□□□□□ -0.61
VPS13D-205ENST00000473099 ZNF12P17014 697 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 OTX1P32242 354 aaPredicted RBP11.25□□□□□ -0.61
VPS13D-205ENST00000473099 S100A5P33763 92 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 TIMP3P35625 211 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 ARR3P36575 388 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 RBPJQ06330 500 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 KLRB1Q12918 225 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 CCDC92Q53HC0 331 aaPredicted RBP11.25□□□□□ -0.61
VPS13D-205ENST00000473099 TMEM53Q6P2H8 277 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 ANKRD16Q6P6B7 361 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 PLXDC2Q6UX71 529 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 TFAP2EQ6VUC0 442 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 CD163Q86VB7 1156 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 CCDC36Q8IYA8 594 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 ELMOD2Q8IZ81 293 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 CISD2Q8N5K1 135 aaKnown RBP11.25□□□□□ -0.61
VPS13D-205ENST00000473099 ZNF283Q8N7M2 679 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 C9orf106Q8NAJ2 232 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 CCDC54Q8NEL0 328 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 TBC1D15Q8TC07 691 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 S100ZQ8WXG8 99 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 FBXO17Q96EF6 278 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 OR14A2Q96R54 314 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 DCLRE1CQ96SD1 692 aaKnown RBP11.25□□□□□ -0.61
VPS13D-205ENST00000473099 SH3GL3Q99963 347 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 TP63Q9H3D4 680 aaPredicted RBP11.25□□□□□ -0.61
VPS13D-205ENST00000473099 HEATR1Q9H583 2144 aaKnown RBP11.25□□□□□ -0.61
VPS13D-205ENST00000473099 PRORYQ9H606 182 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 C12orf49Q9H741 205 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 G6PC2Q9NQR9 355 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 SNTG1Q9NSN8 517 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 LUZP4Q9P127 313 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 FBXL3Q9UKT7 428 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 PEX16Q9Y5Y5 336 aa11.25□□□□□ -0.61
VPS13D-205ENST00000473099 OR6C6A6NF89 314 aa11.24□□□□□ -0.61
VPS13D-205ENST00000473099 ANKRD61A6NGH8 418 aa11.24□□□□□ -0.61
VPS13D-205ENST00000473099 DOK2O60496 412 aa11.24□□□□□ -0.61
VPS13D-205ENST00000473099 WISP2O76076 250 aa11.24□□□□□ -0.61
VPS13D-205ENST00000473099 UBL3O95164 117 aa11.24□□□□□ -0.61
VPS13D-205ENST00000473099 IL2RAP01589 272 aa11.24□□□□□ -0.61
VPS13D-205ENST00000473099 IGHV3-9P01782 118 aa11.24□□□□□ -0.61
VPS13D-205ENST00000473099 ZNF32P17041 273 aa11.24□□□□□ -0.61
VPS13D-205ENST00000473099 CX3CR1P49238 355 aa11.24□□□□□ -0.61
VPS13D-205ENST00000473099 PSMD7P51665 324 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms