RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 CPAMD8Q8IZJ3 1885 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 STMND1H3BQB6 276 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 RAB40ALP0C0E4 278 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 NR2C1P13056 603 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 PTGS2P35354 604 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 MMP15P51511 669 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 P2RY4P51582 365 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 RIN1Q13671 783 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 C2orf76Q3KRA6 126 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 CREB3L2Q70SY1 520 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 RAB40AQ8WXH6 277 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 FYTTD1Q96QD9 318 aaKnown RBP12.12□□□□□ -0.47
CLK3-203ENST00000454830 PRRG4Q9BZD6 226 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 PLEK2Q9NYT0 353 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 BOKQ9UMX3 212 aaPredicted RBP12.12□□□□□ -0.47
CLK3-203ENST00000454830 NPIPB13A6NJU9 1138 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 NPIPB4C9JG80 1138 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 KDM4BO94953 1096 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 HRGP04196 525 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 ACSM4P0C7M7 580 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 ARSBP15848 533 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 ACHEP22303 614 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 EFNB2P52799 333 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 BEST4Q8NFU0 473 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 PNPLA2Q96AD5 504 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 PGAM5Q96HS1 289 aa12.12□□□□□ -0.47
CLK3-203ENST00000454830 HLA-DQB1P01920 261 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 UBCP0CG48 685 aaKnown RBP12.11□□□□□ -0.47
CLK3-203ENST00000454830 HTR2CP28335 458 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 ZNF84P51523 738 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 TAS2R20P59543 309 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 EIF3IQ13347 325 aaKnown RBP12.11□□□□□ -0.47
CLK3-203ENST00000454830 DCAF10Q5QP82 559 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 CDCP2Q5VXM1 449 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 PLXDC2Q6UX71 529 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 ZBTB8BQ8NAP8 495 aaPredicted RBP12.11□□□□□ -0.47
CLK3-203ENST00000454830 TMEM41AQ96HV5 264 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 ALKBH3Q96Q83 286 aaPredicted RBP12.11□□□□□ -0.47
CLK3-203ENST00000454830 GPER1Q99527 375 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.11□□□□□ -0.47
CLK3-203ENST00000454830 RP1L1Q8IWN7 2480 aaPredicted RBP12.11□□□□□ -0.47
CLK3-203ENST00000454830 HMX3A6NHT5 357 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 VAMP5O95183 116 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 ZNF121P58317 390 aaPredicted RBP12.11□□□□□ -0.47
CLK3-203ENST00000454830 KCNJ8Q15842 424 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 CHST4Q8NCG5 386 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 OR8S1Q8NH09 359 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 NPRL2Q8WTW4 380 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 SMIM4Q8WVI0 70 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 ZFP64Q9NPA5 681 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 G6PC2Q9NQR9 355 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 FOXJ3Q9UPW0 622 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 DOCK7Q96N67 2140 aa12.11□□□□□ -0.47
CLK3-203ENST00000454830 PINLYPA6NC86 204 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 ARGFXA6NJG6 315 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 CX3CR1P49238 355 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 AGFG1P52594 562 aaKnown RBP12.1□□□□□ -0.47
CLK3-203ENST00000454830 OR1C1Q15619 314 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 FDX2Q6P4F2 183 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 SLC25A47Q6Q0C1 308 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 AAED1Q7RTV5 226 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 ADPRHL1Q8NDY3 354 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 OR10D3Q8NH80 312 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 HAVCR1Q96D42 359 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 SIGLEC12Q96PQ1 595 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 ZCCHC4Q9H5U6 513 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 A0A0B4J293 547 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 MSR1P21757 451 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 C9orf135Q5VTT2 229 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 GPR137CQ8N3F9 429 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 ZNF845Q96IR2 970 aaPredicted RBP12.1□□□□□ -0.47
CLK3-203ENST00000454830 MRI1Q9BV20 369 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 GPR87Q9BY21 358 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 FAM86C1Q9NVL1 165 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 ZNF222Q9UK12 451 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 ETV7Q9Y603 341 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 NCOA6Q14686 2063 aaPredicted RBP12.1□□□□□ -0.47
CLK3-203ENST00000454830 DHHO43323 396 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 DLX5P56178 289 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 CLDN15P56746 228 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 PHYHD1Q5SRE7 291 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 DEGS2Q6QHC5 323 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 ZNF101Q8IZC7 436 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 OR10S1Q8NGN2 331 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 OR6F1Q8NGZ6 308 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 MED28Q9H204 178 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 GPR84Q9NQS5 396 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 B4GALT7Q9UBV7 327 aa12.1□□□□□ -0.47
CLK3-203ENST00000454830 OR5H15A6NDH6 313 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 SLC17A2O00624 439 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 TTRP02766 147 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 TCRBP04435 133 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 HCKP08631 526 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 ABOP16442 354 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 DDOSTP39656 456 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 AP3S2P59780 193 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 SLC36A2Q495M3 483 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 FGD2Q7Z6J4 655 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 PSMF1Q92530 271 aa12.09□□□□□ -0.47
CLK3-203ENST00000454830 RNF170Q96K19 258 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms