RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TIMM8AO60220 97 aaPredicted RBP12.96□□□□□ -0.33
LIMS3-201ENST00000437679 NCR1O76036 304 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 DBHP09172 617 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 IGHV4-31P0DP07 118 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 ZNF3P17036 446 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 GPR6P46095 362 aaPredicted RBP12.96□□□□□ -0.33
LIMS3-201ENST00000437679 ERFP50548 548 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 MMP15P51511 669 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 CRMP1Q14194 572 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 TSTQ16762 297 aaKnown RBP12.96□□□□□ -0.33
LIMS3-201ENST00000437679 ZMAT1Q5H9K5 638 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 FAM209AQ5JX71 171 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 ZNF362Q5T0B9 420 aaPredicted RBP12.96□□□□□ -0.33
LIMS3-201ENST00000437679 C6orf52Q5T4I8 152 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 SLC18B1Q6NT16 456 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 TMEM179BQ7Z7N9 219 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 OR5L1Q8NGL2 311 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 GTF3AQ92664 365 aaKnown RBP12.96□□□□□ -0.33
LIMS3-201ENST00000437679 RBM4Q9BWF3 364 aaKnown RBP12.96□□□□□ -0.33
LIMS3-201ENST00000437679 MMADHCQ9H3L0 296 aaPredicted RBP12.96□□□□□ -0.33
LIMS3-201ENST00000437679 MRPL22Q9NWU5 206 aaKnown RBP12.96□□□□□ -0.33
LIMS3-201ENST00000437679 CYB5R1Q9UHQ9 305 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 STARD10Q9Y365 291 aa12.96□□□□□ -0.33
LIMS3-201ENST00000437679 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.96□□□□□ -0.34
LIMS3-201ENST00000437679 LRP5LA4QPB2 252 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 DEAF1O75398 565 aaPredicted RBP12.95□□□□□ -0.34
LIMS3-201ENST00000437679 TACSTD2P09758 323 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 POU1F1P28069 291 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 GRK5P34947 590 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 GGT2P36268 569 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 SLC25A1P53007 311 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 TMEM33P57088 247 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 ECH1Q13011 328 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 PSG7Q13046 419 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 KRTAP21-3Q3LHN1 58 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 TMEM255AQ5JRV8 349 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 CFAP77Q6ZQR2 320 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 OR51L1Q8NGJ5 315 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 OR9Q1Q8NGQ5 310 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 PTP4A1Q93096 173 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 YIPF5Q969M3 257 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 APOBEC3DQ96AK3 386 aaPredicted RBP12.95□□□□□ -0.34
LIMS3-201ENST00000437679 SLCO4A1Q96BD0 722 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 CMBLQ96DG6 245 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 EGLN1Q9GZT9 426 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 POFUT1Q9H488 388 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 SAP30LQ9HAJ7 183 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 CMC2Q9NRP2 79 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 ZNF275Q9NSD4 429 aaPredicted RBP12.95□□□□□ -0.34
LIMS3-201ENST00000437679 PURGQ9UJV8 347 aaKnown RBP12.95□□□□□ -0.34
LIMS3-201ENST00000437679 ZDHHC8Q9ULC8 765 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 ABCA2Q9BZC7 2435 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 MALRD1Q5VYJ5 2156 aa12.95□□□□□ -0.34
LIMS3-201ENST00000437679 IGHV1-69-2A0A0G2JMI3 117 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 TVP23AA6NH52 213 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 PPIHO43447 177 aaKnown RBP12.94□□□□□ -0.34
LIMS3-201ENST00000437679 CDC14BO60729 498 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 LILRA1O75019 489 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 CRLF1O75462 422 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 IGHV1-46P01743 117 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 ANXA8P13928 327 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 ZNF16P17020 682 aaPredicted RBP12.94□□□□□ -0.34
LIMS3-201ENST00000437679 SPI1P17947 270 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 FMO3P31513 532 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 BLVRAP53004 296 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 C1orf146Q5VVC0 180 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 SLC27A4Q6P1M0 643 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 USP51Q70EK9 711 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 HS3ST5Q8IZT8 346 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 IQCF1Q8N6M8 205 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 ATG16L2Q8NAA4 619 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 HPS1Q92902 700 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 HAVCR1Q96D42 359 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 ELMOD3Q96FG2 381 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 DIRC2Q96SL1 478 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 ATF6BQ99941 703 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 NMNAT2Q9BZQ4 307 aa12.94□□□□□ -0.34
LIMS3-201ENST00000437679 ANK3Q12955 4377 aaKnown RBP12.94□□□□□ -0.34
LIMS3-201ENST00000437679 LOC100289279A0A1B0GTE1 492 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 ZSCAN5BA6NJL1 495 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 F5H5K5 113 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 TIPRLO75663 272 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 RP2O75695 350 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 GYPBP06028 91 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 OSMP13725 252 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 RAC2P15153 192 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 KITLGP21583 273 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 PRKACGP22612 351 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 CRYBB2P43320 205 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 GINS1Q14691 196 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 TRIP10Q15642 601 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 FAM166AQ6J272 317 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 SHQ1Q6PI26 577 aaKnown RBP12.93□□□□□ -0.34
LIMS3-201ENST00000437679 OR6K6Q8NGW6 343 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 ZNRF4Q8WWF5 429 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 OTULINQ96BN8 352 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 MSI2Q96DH6 328 aaKnown RBP12.93□□□□□ -0.34
LIMS3-201ENST00000437679 NRBF2Q96F24 287 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 MAP6Q96JE9 813 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 TEX12Q9BXU0 123 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms