RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CCDC32Q9BV29 185 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 EDEM2Q9BV94 578 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 MND1Q9BWT6 205 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 C1QTNF6Q9BXI9 259 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 BEX2Q9BXY8 128 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 DNTTIP1Q9H147 329 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 MIXL1Q9H2W2 232 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 ANKRD19PQ9H560 264 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 ELOVL6Q9H5J4 265 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 ZNF385DQ9H6B1 395 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 MAGEF1Q9HAY2 307 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 MYOZ1Q9NP98 299 aaPredicted RBP2.42□□□□□ -2.02
LINC01040-201ENST00000425048 PRMT8Q9NR22 394 aaPredicted RBP2.42□□□□□ -2.02
LINC01040-201ENST00000425048 AGPAT3Q9NRZ7 376 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 MCUBQ9NWR8 336 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 LYARQ9NX58 379 aaKnown RBP2.42□□□□□ -2.02
LINC01040-201ENST00000425048 GHRLQ9UBU3 117 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 CDH9Q9ULB4 789 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 MGAT4BQ9UQ53 548 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 BAIAP2Q9UQB8 552 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 SLC22A14Q9Y267 594 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 MMACHCQ9Y4U1 282 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 PPIAL4AQ9Y536 164 aa2.42□□□□□ -2.02
LINC01040-201ENST00000425048 RLFQ13129 1914 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 ALPK3Q96L96 1907 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 NCF1BA6NI72 391 aaPredicted RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 NCF1CA8MVU1 366 aaPredicted RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 F5H6K3 240 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 H0YCG3 227 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 SMLR1H3BR10 107 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 M0QYV0 167 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 SULT1C2O00338 296 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 ITGB1BP1O14713 200 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CTDSPLO15194 276 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 PRPSAP2O60256 369 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 HCN1O60741 890 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 ATG12O94817 140 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 GADD45GO95257 159 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 VAPBO95292 243 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CFDP00746 253 aaPredicted RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 IFNA10P01566 189 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 C1QAP02745 245 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 OPN1MWP04001 364 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 PCCAP05165 728 aaPredicted RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 BPGMP07738 259 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CD3GP09693 182 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 IQCF3P0C7M6 154 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 ZNF806P0C7X5 589 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 OPN1MW2P0DN77 364 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 OPN1MW3P0DN78 364 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CLUP10909 449 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 PRPS2P11908 318 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 ARF4P18085 180 aaPredicted RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 PAICSP22234 425 aaKnown RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CPN2P22792 545 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 RPS3P23396 243 aaKnown RBP eCLIP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 PTBP1P26599 531 aaKnown RBP eCLIP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CCR1P32246 355 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CCR7P32248 378 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 BMI1P35226 326 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 TGFBR1P36897 503 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 PTGFRP43088 359 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CRATP43155 626 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CCT3P49368 545 aaKnown RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 RBP2P50120 134 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 XKP51811 444 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 PKNOX1P55347 436 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 YBEYP58557 167 aaPredicted RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 SLC26A5P58743 744 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 KIAA1024LP59773 190 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 NUTF2P61970 127 aaKnown RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 RBX1P62877 108 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 SLC7A9P82251 487 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 MRPS11P82912 194 aaKnown RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CSTF1Q05048 431 aaKnown RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 STX4Q12846 297 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 ANGPT1Q15389 498 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CHI3L2Q15782 390 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CHRNA6Q15825 494 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 ZNF404Q494X3 552 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 FAM74A1Q5RGS3 127 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 HECTD3Q5T447 861 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 SYT6Q5T7P8 510 aaPredicted RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 LRRC66Q68CR7 880 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 MBOAT1Q6ZNC8 495 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 HSD17B13Q7Z5P4 300 aaPredicted RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 TGIF2LXQ8IUE1 241 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CRLF3Q8IUI8 442 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CBR4Q8N4T8 237 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 DHRSXQ8N5I4 330 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 C12orf45Q8N5I9 185 aaPredicted RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CCDC71LQ8N9Z2 235 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 TRPV1Q8NER1 839 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 OR8J2Q8NGG1 315 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 OR56B2PQ8NGI1 322 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 OR9A2Q8NGT5 310 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 RNASE11Q8TAA1 199 aaKnown RBP2.41□□□□□ -2.02
LINC01040-201ENST00000425048 RFESDQ8TAC1 157 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 GLYATL2Q8WU03 294 aa2.41□□□□□ -2.02
LINC01040-201ENST00000425048 CYGBQ8WWM9 190 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms