RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LYRM4Q9HD34 91 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 MRPS30Q9NP92 439 aaKnown RBP2.15□□□□□ -2.07
HMGB1-201ENST00000326004 CHRAC1Q9NRG0 131 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 EXD2Q9NVH0 621 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 NUP50Q9UKX7 468 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 CFAP45Q9UL16 551 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 PRG3Q9Y2Y8 225 aaPredicted RBP2.15□□□□□ -2.07
HMGB1-201ENST00000326004 RHBDD3Q9Y3P4 386 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 WSB1Q9Y6I7 421 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 COMMD3-BMI1R4GMX3 469 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 FER1L6Q2WGJ9 1857 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 CHD6Q8TD26 2715 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 COL4A5P29400 1685 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 ZBED9Q6R2W3 1325 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 NUP214P35658 2090 aaPredicted RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 DOCK9Q9BZ29 2069 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 TJP1Q07157 1748 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF292O60281 2723 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF701M0R085 212 aaPredicted RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 TRDMT1O14717 391 aaKnown RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 MGRN1O60291 552 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 ICOSLGO75144 302 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 TSPAN13O95857 204 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 PCCAP05165 728 aaPredicted RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 ANXA5P08758 320 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 RHOXF2BP0C7M4 288 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 UBTFL1P0CB47 393 aaPredicted RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 MSR1P21757 451 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 STOMP27105 288 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 IFNA8P32881 189 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 NUP62P37198 522 aaPredicted RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 BCAP31P51572 246 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 HADHBP55084 474 aaKnown RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 DAOAP59103 153 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 RAB10P61026 200 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 HERVK_113P61574 105 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 SHHQ15465 462 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 STK11Q15831 433 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 RFX4Q33E94 735 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 FBXO48Q5FWF7 155 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 TWF2Q6IBS0 349 aaKnown RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 SLC25A48Q6ZT89 311 aaKnown RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 PIANPQ8IYJ0 282 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 OR4F15Q8NGB8 312 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 OR4A4PQ8NGN8 299 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 RHEBL1Q8TAI7 183 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 ACER1Q8TDN7 264 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 SMARCD2Q92925 531 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 RNF185Q96GF1 192 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 RHOXF2Q9BQY4 288 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 FAIM2Q9BWQ8 316 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 MFFQ9GZY8 342 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 RACGAP1Q9H0H5 632 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 STMN4Q9H169 189 aaPredicted RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 NEUROG2Q9H2A3 272 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 FBXO44Q9H4M3 255 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 HAUS4Q9H6D7 363 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 UGT1A10Q9HAW8 530 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 MYOZ2Q9NPC6 264 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 MED4Q9NPJ6 270 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 LYARQ9NX58 379 aaKnown RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 CALYQ9NYX4 217 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 SLC25A37Q9NYZ2 338 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 MTCH1Q9NZJ7 389 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 STOX2Q9P2F5 926 aaPredicted RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 XCL2Q9UBD3 114 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 PRO0461Q9UI25 63 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 MMP17Q9ULZ9 603 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 COL4A6Q14031 1691 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 MYOM3Q5VTT5 1437 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 USP42Q9H9J4 1324 aaKnown RBP2.14□□□□□ -2.07
HMGB1-201ENST00000326004 PRUNE2Q8WUY3 3088 aa2.14□□□□□ -2.07
HMGB1-201ENST00000326004 SPTBN4Q9H254 2564 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 DLEC1Q9Y238 1755 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 CARMIL3Q8ND23 1372 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 RAB3GAP2Q9H2M9 1393 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 IGLV3-16A0A075B6K0 115 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 SMCO2A6NFE2 343 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 NDUFS8O00217 210 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 LAD1O00515 517 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 PEX7O00628 323 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 RAB29O14966 203 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 CHST1O43916 411 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 SLC25A27O95847 323 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 IVLP07476 585 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 PLEKP08567 350 aaPredicted RBP2.13□□□□□ -2.07
HMGB1-201ENST00000326004 TCN1P20061 433 aaPredicted RBP2.13□□□□□ -2.07
HMGB1-201ENST00000326004 U2AF2P26368 475 aaKnown RBP eCLIP2.13□□□□□ -2.071e-7■■■■■ 37.5
HMGB1-201ENST00000326004 DCKP27707 260 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 RRM2P31350 389 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 NSG1P42857 185 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 RFX3P48380 749 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 ACVR1Q04771 509 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 PDIA2Q13087 525 aaKnown RBP2.13□□□□□ -2.07
HMGB1-201ENST00000326004 SELENBP1Q13228 472 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 PSG5Q15238 335 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 ZSCAN26Q16670 478 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 PIGGQ5H8A4 983 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 COA6Q5JTJ3 125 aaKnown RBP2.13□□□□□ -2.07
HMGB1-201ENST00000326004 C9orf135Q5VTT2 229 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms