RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 TOR1AO14656 332 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 TSPAN4O14817 238 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 SRSF10O75494 262 aaKnown RBP13.75□□□□□ -0.21
LSM6-201ENST00000296581 ARL6IP5O75915 188 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 ITGB2P05107 769 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 CDAP32320 146 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 KIR3DL2P43630 455 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 CAV3P56539 151 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 RNFT1Q5M7Z0 435 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 OR7E24Q6IFN5 339 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 SLC7A6Q92536 515 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 WDFY2Q96P53 400 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 OR14A2Q96R54 314 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 B3GNT2Q9NY97 397 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 LHFPL6Q9Y693 200 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 TRBV5-5A0A0J9YX44 114 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 ZNF879B4DU55 563 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 PNPP00491 289 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 FOXC1Q12948 553 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 WDR38Q5JTN6 314 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 TMEM65Q6PI78 240 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 CORO6Q6QEF8 472 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 NR2C2APQ86WQ0 139 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 DEDD2Q8WXF8 326 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 SMAD5Q99717 465 aaKnown RBP13.75□□□□□ -0.21
LSM6-201ENST00000296581 C1orf198Q9H425 327 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 IFT22Q9H7X7 185 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 EMC7Q9NPA0 242 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 LIPGQ9Y5X9 500 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 ZNF407Q9C0G0 2248 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 IGKV3D-15A0A087WSY6 115 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 TRAV17A0A0B4J275 112 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 KLK10O43240 276 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 DHHO43323 396 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 NCR1O76036 304 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 HOXB1P14653 301 aaPredicted RBP13.74□□□□□ -0.21
LSM6-201ENST00000296581 ERP29P30040 261 aaKnown RBP13.74□□□□□ -0.21
LSM6-201ENST00000296581 NTF4P34130 210 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 NRARPQ7Z6K4 114 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 SLAMF6Q96DU3 332 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 COMMD4Q9H0A8 199 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 PHF3Q92576 2039 aaKnown RBP13.74□□□□□ -0.21
LSM6-201ENST00000296581 MEIOCA2RUB1 952 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 PIN1P1O15428 100 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 SLC43A1O75387 559 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 TNFSF8P32971 234 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 LSM6P62312 80 aaKnown RBP13.74□□□□□ -0.21
LSM6-201ENST00000296581 SRYQ05066 204 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 FAPQ12884 760 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 RHOUQ7L0Q8 258 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 CATSPERDQ86XM0 798 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 LIX1LQ8IVB5 337 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 OR10S1Q8NGN2 331 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 TMEM45BQ96B21 275 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 NEDD4LQ96PU5 975 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 DERL3Q96Q80 235 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 ATF6BQ99941 703 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 GDF2Q9UK05 429 aaPredicted RBP13.74□□□□□ -0.21
LSM6-201ENST00000296581 R4GMQ9 66 aa13.74□□□□□ -0.21
LSM6-201ENST00000296581 DNAJC13O75165 2243 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 A0A0G2JK05 382 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 DCTDP32321 178 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 MFGE8Q08431 387 aaPredicted RBP13.73□□□□□ -0.21
LSM6-201ENST00000296581 Q499Y3 187 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 HSD17B12Q53GQ0 312 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 AAED1Q7RTV5 226 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 ZNF676Q8N7Q3 588 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 ABHD3Q8WU67 409 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 ZNF775Q96BV0 537 aaPredicted RBP13.73□□□□□ -0.21
LSM6-201ENST00000296581 ULBP2Q9BZM5 246 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 DEFB127Q9H1M4 99 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 TBC1D24Q9ULP9 559 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 WASF3Q9UPY6 502 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 CMAHPQ9Y471 501 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 TRGV5A0A0B4J1U4 118 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 GPR171O14626 319 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 H2BFMP0C1H6 154 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 MSR1P21757 451 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 SDHBP21912 280 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 XKRXQ6PP77 449 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 CFAP77Q6ZQR2 320 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 LAX1Q8IWV1 398 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 OR2AJ1Q8NGZ0 328 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 NABP1Q96AH0 204 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 USB1Q9BQ65 265 aaKnown RBP13.73□□□□□ -0.21
LSM6-201ENST00000296581 MIXL1Q9H2W2 232 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 NELFAQ9H3P2 528 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 NOX4Q9NPH5 578 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 ZC4H2Q9NQZ6 224 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 FBXL3Q9UKT7 428 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 SSUH2Q9Y2M2 353 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 POLR1DQ9Y2S0 133 aa13.73□□□□□ -0.21
LSM6-201ENST00000296581 A0A1W2PPK0 400 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 ACOD1A6NK06 481 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 RGS5O15539 181 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 SYNGR4O95473 234 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 SPINK2P20155 84 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 MAPK3P27361 379 aaPredicted RBP13.72□□□□□ -0.21
LSM6-201ENST00000296581 GPR148Q8TDV2 347 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 SLC30A2Q9BRI3 323 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms