RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ATPAF1Q5TC12 328 aaPredicted RBP9.01□□□□□ -0.97
LIG3-201ENST00000262327 ALKBH2Q6NS38 261 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 DNM1P46Q6ZS02 220 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 KCTD9Q7L273 389 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 ZNF679Q8IYX0 411 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 OR13C3Q8NGS6 347 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 GPX8Q8TED1 209 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 LRRC61Q9BV99 259 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 ZNF471Q9BX82 626 aaPredicted RBP9.01□□□□□ -0.97
LIG3-201ENST00000262327 TAS2R8Q9NYW2 309 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 KLK13Q9UKR3 277 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 TMEM14AQ9Y6G1 99 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 D6RAR5 112 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 P2RY10O00398 339 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 SIGLEC6O43699 453 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 NSA2O95478 260 aaKnown RBP9.01□□□□□ -0.97
LIG3-201ENST00000262327 IL33O95760 270 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 HLA-AP01891 365 aaKnown RBP9.01□□□□□ -0.97
LIG3-201ENST00000262327 BGLAPP02818 100 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 FGF2P09038 288 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 RNF224P0DH78 156 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 IL12BP29460 328 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 DNASE1L1P49184 302 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 RAB13P51153 203 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 CDNFQ49AH0 187 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 C1orf189Q5VU69 101 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 SLC18B1Q6NT16 456 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 UNQ6126/PRO20091Q6UXV3 157 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 RNF144BQ7Z419 303 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 ZNF440Q8IYI8 595 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 OR4D6Q8NGJ1 314 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 NUDCD2Q8WVJ2 157 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 SLC38A3Q99624 504 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 NUDT9Q9BW91 350 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 TAS2R3Q9NYW6 316 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 IGHV3-20A0A0C4DH32 117 aa9□□□□□ -0.97
LIG3-201ENST00000262327 PQLC2LA1A4F0 135 aa9□□□□□ -0.97
LIG3-201ENST00000262327 OR5H14A6NHG9 310 aa9□□□□□ -0.97
LIG3-201ENST00000262327 ZNF736B4DX44 427 aaPredicted RBP9□□□□□ -0.97
LIG3-201ENST00000262327 SHISA8B8ZZ34 492 aa9□□□□□ -0.97
LIG3-201ENST00000262327 EEF1E1-BLOC1S5C9J1V9 151 aa9□□□□□ -0.97
LIG3-201ENST00000262327 H7C2Y5 167 aa9□□□□□ -0.97
LIG3-201ENST00000262327 TXNDC12O95881 172 aa9□□□□□ -0.97
LIG3-201ENST00000262327 CYB5AP00167 134 aa9□□□□□ -0.97
LIG3-201ENST00000262327 ARRB1P49407 418 aaPredicted RBP9□□□□□ -0.97
LIG3-201ENST00000262327 STARP49675 285 aa9□□□□□ -0.97
LIG3-201ENST00000262327 CAPZA1P52907 286 aa9□□□□□ -0.97
LIG3-201ENST00000262327 ATP1B3P54709 279 aa9□□□□□ -0.97
LIG3-201ENST00000262327 IGLV3-21P80748 117 aaPredicted RBP9□□□□□ -0.97
LIG3-201ENST00000262327 PMPCAQ10713 525 aa9□□□□□ -0.97
LIG3-201ENST00000262327 SLC16A13Q7RTY0 426 aa9□□□□□ -0.97
LIG3-201ENST00000262327 C15orf40Q8WUR7 153 aa9□□□□□ -0.97
LIG3-201ENST00000262327 ZNF587Q96SQ5 575 aaPredicted RBP9□□□□□ -0.97
LIG3-201ENST00000262327 SPOCK3Q9BQ16 436 aa9□□□□□ -0.97
LIG3-201ENST00000262327 TBL1XR1Q9BZK7 514 aa9□□□□□ -0.97
LIG3-201ENST00000262327 PRR13Q9NZ81 148 aa9□□□□□ -0.97
LIG3-201ENST00000262327 TMED7Q9Y3B3 224 aa9□□□□□ -0.97
LIG3-201ENST00000262327 IGKV1D-43A0A0B4J1Z2 117 aa9□□□□□ -0.97
LIG3-201ENST00000262327 A0A1W2PR77 199 aa9□□□□□ -0.97
LIG3-201ENST00000262327 EIF1BO60739 113 aaKnown RBP9□□□□□ -0.97
LIG3-201ENST00000262327 ZNF432O94892 652 aa9□□□□□ -0.97
LIG3-201ENST00000262327 HPP00738 406 aa9□□□□□ -0.97
LIG3-201ENST00000262327 ITGB2P05107 769 aa9□□□□□ -0.97
LIG3-201ENST00000262327 MYF5P13349 255 aa9□□□□□ -0.97
LIG3-201ENST00000262327 VAMP1P23763 118 aa9□□□□□ -0.97
LIG3-201ENST00000262327 CD34P28906 385 aa9□□□□□ -0.97
LIG3-201ENST00000262327 CD38P28907 300 aa9□□□□□ -0.97
LIG3-201ENST00000262327 GNALP38405 381 aa9□□□□□ -0.97
LIG3-201ENST00000262327 EIF1P41567 113 aaKnown RBP9□□□□□ -0.97
LIG3-201ENST00000262327 RIDAP52758 137 aaKnown RBP9□□□□□ -0.97
LIG3-201ENST00000262327 TAS2R19P59542 299 aa9□□□□□ -0.97
LIG3-201ENST00000262327 CXADRP78310 365 aa9□□□□□ -0.97
LIG3-201ENST00000262327 SWI5Q1ZZU3 235 aa9□□□□□ -0.97
LIG3-201ENST00000262327 PXT1Q8NFP0 134 aa9□□□□□ -0.97
LIG3-201ENST00000262327 OR13C8Q8NGS7 320 aa9□□□□□ -0.97
LIG3-201ENST00000262327 RNF128Q8TEB7 428 aa9□□□□□ -0.97
LIG3-201ENST00000262327 EDAQ92838 391 aa9□□□□□ -0.97
LIG3-201ENST00000262327 SLC41A2Q96JW4 573 aa9□□□□□ -0.97
LIG3-201ENST00000262327 VRK1Q99986 396 aaPredicted RBP9□□□□□ -0.97
LIG3-201ENST00000262327 ADAT1Q9BUB4 502 aaKnown RBP9□□□□□ -0.97
LIG3-201ENST00000262327 DUSP15Q9H1R2 295 aaPredicted RBP9□□□□□ -0.97
LIG3-201ENST00000262327 CKLFQ9UBR5 152 aa9□□□□□ -0.97
LIG3-201ENST00000262327 EPHA6Q9UF33 1036 aa9□□□□□ -0.97
LIG3-201ENST00000262327 VSIG4Q9Y279 399 aa9□□□□□ -0.97
LIG3-201ENST00000262327 LOC107986453A0A1B0GWG9 222 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 WIPF3A6NGB9 483 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 TUBAL3A6NHL2 446 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 RFPL4AA6NLU0 287 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 RFPL4AL1F8VTS6 287 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 AKR1C4P17516 323 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 PPICP45877 212 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 HSD17B7P56937 341 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 RPL27P61353 136 aaKnown RBP8.99□□□□□ -0.97
LIG3-201ENST00000262327 GLT8D1Q68CQ7 371 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 DCXRQ7Z4W1 244 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 LMX1AQ8TE12 382 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 PPP1R1CQ8WVI7 109 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 DPYSL5Q9BPU6 564 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 EMC6Q9BV81 110 aa8.99□□□□□ -0.97
LIG3-201ENST00000262327 MED29Q9NX70 200 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms