RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 NUFIP1Q9UHK0 495 aaKnown RBP9.33□□□□□ -0.92
CLN3-248ENST00000636355 CAMK2AQ9UQM7 478 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 URB1O60287 2271 aaKnown RBP9.33□□□□□ -0.92
CLN3-248ENST00000636355 MED12LQ86YW9 2145 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 EPG5Q9HCE0 2579 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 A0A087WV48 116 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 CD8B2A6NJW9 211 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 AHRRA9YTQ3 701 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 PDCD5O14737 125 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 RPP14O95059 124 aaKnown RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 MPZL1O95297 269 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 ZNF12P17014 697 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 CALRP27797 417 aaKnown RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 HSD11B1P28845 292 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 CD40LGP29965 261 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 AGTR1P30556 359 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 TGFBR1P36897 503 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 RPS19P39019 145 aaKnown RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 PSMB10P40306 273 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 RPS27P42677 84 aaKnown RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 KIR3DL2P43630 455 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 SCAND1P57086 179 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 ZNF45Q02386 682 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 HNRNPA0Q13151 305 aaKnown RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 ENDOGQ14249 297 aaKnown RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 RAB35Q15286 201 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 GUSBP1Q15486 140 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 HSD17B12Q53GQ0 312 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 KRTCAP3Q53RY4 240 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 BCL2L15Q5TBC7 163 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 TMEM244Q5VVB8 128 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 CFAP77Q6ZQR2 320 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 CEACAM19Q7Z692 300 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 RBMXL3Q8N7X1 1067 aaKnown RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 OR10S1Q8NGN2 331 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 HSD17B8Q92506 261 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 RGP1Q92546 391 aaPredicted RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 WNT2BQ93097 391 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 ZFP3Q96NJ6 502 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 DERL3Q96Q80 235 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 ALKBH3Q96Q83 286 aaPredicted RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 OR14A2Q96R54 314 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 DCLRE1CQ96SD1 692 aaKnown RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 ATF6BQ99941 703 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 PDCD1LG2Q9BQ51 273 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 SLITRK2Q9H156 845 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 RNF167Q9H6Y7 350 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 CALHM2Q9HA72 323 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 PLGRKTQ9HBL7 147 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 CRLF2Q9HC73 371 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 GPR35Q9HC97 309 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 EMC7Q9NPA0 242 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 PNRC2Q9NPJ4 139 aaKnown RBP9.32□□□□□ -0.92
CLN3-248ENST00000636355 SNTG1Q9NSN8 517 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 FAM206AQ9NX38 181 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 HHLA2Q9UM44 414 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 NCOR2Q9Y618 2525 aa9.32□□□□□ -0.92
CLN3-248ENST00000636355 IGF2RP11717 2491 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 TRBV5-7A0A0A0MS05 114 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 TMEM269A0A1B0GVZ9 245 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 MAGEB4O15481 346 aaPredicted RBP9.31□□□□□ -0.92
CLN3-248ENST00000636355 KRT33AO76009 404 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 WNT11O96014 354 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 CRHP06850 196 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 HOXD4P09016 255 aaPredicted RBP9.31□□□□□ -0.92
CLN3-248ENST00000636355 OCM2P0CE71 109 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 GABRA1P14867 456 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 CDAP32320 146 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 RANBP1P43487 201 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 PSMD7P51665 324 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 PPP3R1P63098 170 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 PHYHD1Q5SRE7 291 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 MZT2AQ6P582 158 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 FAM180AQ6UWF9 173 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.31□□□□□ -0.92
CLN3-248ENST00000636355 LINC00346Q8IVM7 164 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 ELMOD2Q8IZ81 293 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 PRSS35Q8N3Z0 413 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 MFSD4AQ8N468 514 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 GPR137Q96N19 417 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 FOXN4Q96NZ1 517 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 TAAR6Q96RI8 345 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 RBM24Q9BX46 236 aaKnown RBP9.31□□□□□ -0.92
CLN3-248ENST00000636355 BARHL1Q9BZE3 327 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 C6orf62Q9GZU0 229 aaPredicted RBP9.31□□□□□ -0.92
CLN3-248ENST00000636355 SP140LQ9H930 580 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 G6PC2Q9NQR9 355 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 ZNF391Q9UJN7 358 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 ADAM30Q9UKF2 790 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 LHX6Q9UPM6 363 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 EMC9Q9Y3B6 208 aa9.31□□□□□ -0.92
CLN3-248ENST00000636355 A0A0U1RQV5 110 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 LOC107986453A0A1B0GWG9 222 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 TMEM8BA6NDV4 472 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 FIGNL2A6NMB9 653 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 DHRS7CA6NNS2 312 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 NOTOA8MTQ0 251 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 PSMD9O00233 223 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 WDR1O75083 606 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 RAB3BP20337 219 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms