RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 J3KTA2 159 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 ELFN2Q5R3F8 820 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 STEAP1BQ6NZ63 245 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 GALNT16Q8N428 558 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 NUDT16L1Q9BRJ7 211 aaKnown RBP18.62■□□□□ 0.57
UPF1-207ENST00000599848 C1QTNF3Q9BXJ4 246 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 URB1O60287 2271 aaKnown RBP18.61■□□□□ 0.57
UPF1-207ENST00000599848 TNFSF11O14788 317 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 ANKRD16Q6P6B7 361 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 TMEM81Q6P7N7 255 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 ZNF511Q8NB15 262 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 SLCO4A1Q96BD0 722 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 RASD2Q96D21 266 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 MRGPRX3Q96LB0 322 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 FBXL4Q9UKA2 621 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 SCN11AQ9UI33 1791 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 OPRM1P35372 400 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 ZNF85Q03923 595 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 SLA2Q9H6Q3 261 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 RPS10P5Q9NQ39 176 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 MS4A2Q01362 244 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 MICBQ29980 383 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 LEXMQ3ZCV2 418 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 ITPKCQ96DU7 683 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 REEP6Q96HR9 211 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 CHRDL1Q9BU40 450 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 IL21Q9HBE4 155 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 IMPA2O14732 288 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 TAPBPO15533 448 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 PPIHO43447 177 aaKnown RBP18.61■□□□□ 0.57
UPF1-207ENST00000599848 PMS2P2O95744 297 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 GIFP27352 417 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 PATE1Q8WXA2 126 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 FAM122AQ96E09 287 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 BCL2L10Q9HD36 194 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 ZFP64Q9NPA5 681 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 RNF150Q9ULK6 438 aa18.61■□□□□ 0.57
UPF1-207ENST00000599848 A0A1W2PNR3 127 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 PRKRAO75569 313 aaKnown RBP18.6■□□□□ 0.57
UPF1-207ENST00000599848 RAB6AP20340 208 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 PTBP1P26599 531 aaKnown RBP eCLIP18.6■□□□□ 0.574e-6■■□□□ 11.8
UPF1-207ENST00000599848 FLI1Q01543 452 aaPredicted RBP18.6■□□□□ 0.57
UPF1-207ENST00000599848 SFXN4Q6P4A7 337 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 B3GNT8Q7Z7M8 397 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 OR2T6Q8NHC8 308 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 HSD17B6O14756 317 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 FAM157BP0CG42 384 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 SLC38A9Q8NBW4 561 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 GNRHR2Q96P88 292 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 ZNF436Q9C0F3 470 aaPredicted RBP18.6■□□□□ 0.57
UPF1-207ENST00000599848 LOC107986453A0A1B0GWG9 222 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 BOLA2-SMG1P6H3BVE0 249 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 DVL1O14640 695 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 SCG5P05408 212 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 BRS3P32247 399 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 DVL1P1P54792 670 aaPredicted RBP18.6■□□□□ 0.57
UPF1-207ENST00000599848 DHODHQ02127 395 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 TOMM34Q15785 309 aaPredicted RBP18.6■□□□□ 0.57
UPF1-207ENST00000599848 Q6ZS52 159 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 MOB1BQ7L9L4 216 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 KDM8Q8N371 416 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 LGALS14Q8TCE9 139 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 EMC7Q9NPA0 242 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 HPP00738 406 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 LFNGQ8NES3 379 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 OR13G1Q8NGZ3 307 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 MED20Q9H944 212 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 THYN1Q9P016 225 aa18.6■□□□□ 0.57
UPF1-207ENST00000599848 SIRPB1O00241 398 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 PPP6CO00743 305 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 MT-ND4P03905 459 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 SLC6A12P48065 614 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 FUT6P51993 359 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 PRRX1P54821 245 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 CDX4O14627 284 aaPredicted RBP18.59■□□□□ 0.57
UPF1-207ENST00000599848 ALDOCP09972 364 aaKnown RBP18.59■□□□□ 0.57
UPF1-207ENST00000599848 GABRB3P28472 473 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 ACER2Q5QJU3 275 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 OR2T11Q8NH01 316 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 TMIGD3P0DMS9 266 aaPredicted RBP18.59■□□□□ 0.57
UPF1-207ENST00000599848 RETREG3Q86VR2 466 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 GAL3ST2Q9H3Q3 398 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 TRDV1A0A1B0GX56 115 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 TNFSF12O43508 249 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 IAH1Q2TAA2 248 aaPredicted RBP18.59■□□□□ 0.57
UPF1-207ENST00000599848 FAM162BQ5T6X4 162 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 FOXB1Q99853 325 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 NMES1Q9C002 83 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 HOXD4P09016 255 aaPredicted RBP18.59■□□□□ 0.57
UPF1-207ENST00000599848 DUSP1P28562 367 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 PELI1Q96FA3 418 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 EMC6Q9BV81 110 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 TXNL4BQ9NX01 149 aaKnown RBP18.59■□□□□ 0.57
UPF1-207ENST00000599848 ZNF225Q9UK10 706 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 PRDM4Q9UKN5 801 aa18.59■□□□□ 0.57
UPF1-207ENST00000599848 MBP02144 154 aa18.58■□□□□ 0.57
UPF1-207ENST00000599848 GUSBP11Q6P575 273 aa18.58■□□□□ 0.57
UPF1-207ENST00000599848 Q6ZSR9 355 aa18.58■□□□□ 0.57
UPF1-207ENST00000599848 OR10G3Q8NGC4 313 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms