RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 UBOX5O94941 541 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 AVPP01185 164 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 IGHV2-5P01817 119 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 SEMG1P04279 462 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 C1orf94Q6P1W5 598 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 DPY19L2P2Q6ZN68 376 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 ZER1Q7Z7L7 766 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 GLB1L2Q8IW92 636 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.34■□□□□ 0.37
SHMT1-209ENST00000582653 ZNF418Q8TF45 676 aaPredicted RBP17.34■□□□□ 0.37
SHMT1-209ENST00000582653 TSSK2Q96PF2 358 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 DIRC2Q96SL1 478 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 EGLN1Q9GZT9 426 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 TBCCD1Q9NVR7 557 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 ASH2LQ9UBL3 628 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 DCTN6O00399 190 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 GADD45GO95257 159 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 PPP1R3DO95685 299 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 CENPAP49450 140 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 RPS6KA3P51812 740 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 SPIBQ01892 262 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 SLC3A1Q07837 685 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 AQP6Q13520 282 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 CCDC92Q53HC0 331 aaPredicted RBP17.33■□□□□ 0.36
SHMT1-209ENST00000582653 MTX3Q5HYI7 312 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 SMARCD3Q6STE5 483 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 USP43Q70EL4 1123 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.33■□□□□ 0.36
SHMT1-209ENST00000582653 SEMA6DQ8NFY4 1073 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 CMBLQ96DG6 245 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 ERMAPQ96PL5 475 aaPredicted RBP17.33■□□□□ 0.36
SHMT1-209ENST00000582653 CDRT15Q96T59 188 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 TMPRSS13Q9BYE2 586 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 NSRP1Q9H0G5 558 aaKnown RBP17.33■□□□□ 0.36
SHMT1-209ENST00000582653 ARL8BQ9NVJ2 186 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 DCAF16Q9NXF7 216 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 CD300AQ9UGN4 299 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 PCDHB10Q9UN67 800 aa17.33■□□□□ 0.36
SHMT1-209ENST00000582653 A0A0G2JMP0 313 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 A0A0X1KG70 313 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 J3QLI3 93 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 RER1O15258 196 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 TXNDC12O95881 172 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 DBHP09172 617 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 HSD17B1P14061 328 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 GSTM3P21266 225 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 TUBG1P23258 451 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 ERFP50548 548 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 LSM6P62312 80 aaKnown RBP17.32■□□□□ 0.36
SHMT1-209ENST00000582653 TNFAIP6P98066 277 aaPredicted RBP17.32■□□□□ 0.36
SHMT1-209ENST00000582653 MEP1BQ16820 701 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 ADCK1Q86TW2 530 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 OR4M2Q8NGB6 313 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 KRCC1Q9NPI7 259 aaPredicted RBP17.32■□□□□ 0.36
SHMT1-209ENST00000582653 TUBG2Q9NRH3 451 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 MAGEL2Q9UJ55 1249 aa17.32■□□□□ 0.36
SHMT1-209ENST00000582653 PURGQ9UJV8 347 aaKnown RBP17.32■□□□□ 0.36
SHMT1-209ENST00000582653 LOC105371242A0A075B767 164 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 CD55P08174 381 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 GATA3P23771 443 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 CDK5R2Q13319 367 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 RFX4Q33E94 735 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 C12orf54Q6X4T0 127 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 Q6ZR03 302 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 PEG10Q86TG7 708 aaKnown RBP17.31■□□□□ 0.36
SHMT1-209ENST00000582653 PGAM4Q8N0Y7 254 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 NPEPL1Q8NDH3 523 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 OR1F12Q8NHA8 337 aa17.31■□□□□ 0.36
SHMT1-209ENST00000582653 SRA1Q9HD15 236 aaKnown RBP17.31■□□□□ 0.36
SHMT1-209ENST00000582653 ISPDA4D126 451 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 OR6C6A6NF89 314 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 ARPC2O15144 300 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 EPHA1P21709 976 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 SMIM11AP58511 58 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 GNGT1P63211 74 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 KCNMB1Q16558 191 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 ZMAT1Q5H9K5 638 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 SAMD4BQ5PRF9 694 aaKnown RBP17.3■□□□□ 0.36
SHMT1-209ENST00000582653 LEG1Q6P5S2 330 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 OR2Z1Q8NG97 314 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 FANK1Q8TC84 345 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 HAVCR1Q96D42 359 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 NSMCE2Q96MF7 247 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 DCLRE1CQ96SD1 692 aaKnown RBP17.3■□□□□ 0.36
SHMT1-209ENST00000582653 NMNAT3Q96T66 252 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 GAL3ST1Q99999 423 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 OR52D1Q9H346 318 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 TAGLN3Q9UI15 199 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 B9D1Q9UPM9 204 aa17.3■□□□□ 0.36
SHMT1-209ENST00000582653 NBEAL1Q6ZS30 2694 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 OR10H3O60404 316 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 FABP3P05413 133 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 KITLGP21583 273 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 RRM2P31350 389 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 HILS1P60008 231 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 HLXQ14774 488 aaPredicted RBP17.29■□□□□ 0.36
SHMT1-209ENST00000582653 DCAF12L2Q5VW00 463 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 CORO6Q6QEF8 472 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 C1QL2Q7Z5L3 287 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 OR6V1Q8N148 313 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms