RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 RPL3LQ92901 407 aaKnown RBP21.96■■□□□ 1.11
SHMT1-207ENST00000580002 E9PLN8 166 aa21.95■■□□□ 1.1
SHMT1-207ENST00000580002 PHYHO14832 338 aa21.95■■□□□ 1.1
SHMT1-207ENST00000580002 MMP7P09237 267 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-207ENST00000580002 PSG4Q00888 419 aa21.95■■□□□ 1.1
SHMT1-207ENST00000580002 AQP6Q13520 282 aa21.95■■□□□ 1.1
SHMT1-207ENST00000580002 RSPO1Q2MKA7 263 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-207ENST00000580002 SOWAHCQ53LP3 525 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-207ENST00000580002 CXorf67Q86X51 503 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-207ENST00000580002 TMEM203Q969S6 136 aa21.95■■□□□ 1.1
SHMT1-207ENST00000580002 ZFP3Q96NJ6 502 aa21.95■■□□□ 1.1
SHMT1-207ENST00000580002 VKORC1Q9BQB6 163 aa21.95■■□□□ 1.1
SHMT1-207ENST00000580002 SFXN3Q9BWM7 321 aa21.95■■□□□ 1.1
SHMT1-207ENST00000580002 CPEP16870 476 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 MFGE8Q08431 387 aaPredicted RBP21.94■■□□□ 1.1
SHMT1-207ENST00000580002 STK11Q15831 433 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 EIF2S3LQ2VIR3 472 aaKnown RBP21.94■■□□□ 1.1
SHMT1-207ENST00000580002 ABHD12BQ7Z5M8 362 aaPredicted RBP21.94■■□□□ 1.1
SHMT1-207ENST00000580002 MROQ9BYG7 248 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 WNT5BQ9H1J7 359 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 SULT1C4O75897 302 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 H2BFMP0C1H6 154 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 CD8BP10966 210 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 UQCRFS1P47985 274 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 RPS25P62851 125 aaKnown RBP21.94■■□□□ 1.1
SHMT1-207ENST00000580002 SLC3A1Q07837 685 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 ACSM1Q08AH1 577 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 TPBGQ13641 420 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 INSL4Q14641 139 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 KCTD18Q6PI47 426 aaPredicted RBP21.94■■□□□ 1.1
SHMT1-207ENST00000580002 ARL9Q6T311 187 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 NAA40Q86UY6 237 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 DCLRE1CQ96SD1 692 aaKnown RBP21.94■■□□□ 1.1
SHMT1-207ENST00000580002 OR51E2Q9H255 320 aa21.94■■□□□ 1.1
SHMT1-207ENST00000580002 CCL21O00585 134 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 DBHP09172 617 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 GADD45AP24522 165 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 TGFBR1P36897 503 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 CAPZA2P47755 286 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 GBX2P52951 348 aaPredicted RBP21.93■■□□□ 1.1
SHMT1-207ENST00000580002 GABRA6Q16445 453 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 TBRG1Q3YBR2 411 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 ANKRD16Q6P6B7 361 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 SLC16A12Q6ZSM3 486 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 RELL2Q8NC24 303 aaPredicted RBP21.93■■□□□ 1.1
SHMT1-207ENST00000580002 GJC3Q8NFK1 279 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 TRMT61AQ96FX7 289 aaKnown RBP21.93■■□□□ 1.1
SHMT1-207ENST00000580002 OR2H1Q9GZK4 316 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 ISYNA1Q9NPH2 558 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 BRD7Q9NPI1 651 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 BATF3Q9NR55 127 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 SF3B6Q9Y3B4 125 aaKnown RBP21.93■■□□□ 1.1
SHMT1-207ENST00000580002 PRR14LQ5THK1 2151 aa21.93■■□□□ 1.1
SHMT1-207ENST00000580002 DVL2O14641 736 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 SRSF10O75494 262 aaKnown RBP21.92■■□□□ 1.1
SHMT1-207ENST00000580002 COX5AP20674 150 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 PRKXP51817 358 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 LSM3P62310 102 aaKnown RBP21.92■■□□□ 1.1
SHMT1-207ENST00000580002 PRSS35Q8N3Z0 413 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 CPEB3Q8NE35 698 aaKnown RBP21.92■■□□□ 1.1
SHMT1-207ENST00000580002 RNF167Q9H6Y7 350 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 TRIM36Q9NQ86 728 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 PLEK2Q9NYT0 353 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 FRRS1LQ9P0K9 344 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 SLC22A13Q9Y226 551 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 CIB4A0PJX0 185 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 C5orf63A6NC05 138 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 HSPB2A8KAH6 182 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 EEF1E1-BLOC1S5C9J1V9 151 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 CCRL2O00421 344 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 OGG1O15527 345 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 EEF1E1O43324 174 aaKnown RBP21.92■■□□□ 1.1
SHMT1-207ENST00000580002 FARS2O95363 451 aaKnown RBP21.92■■□□□ 1.1
SHMT1-207ENST00000580002 CD79AP11912 226 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 RIDAP52758 137 aaKnown RBP21.92■■□□□ 1.1
SHMT1-207ENST00000580002 GALK2Q01415 458 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 TLE1Q04724 770 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 HSPB2Q16082 182 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 ODF4Q2M2E3 257 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 DMKNQ6E0U4 476 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-207ENST00000580002 FAM220AQ7Z4H9 259 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 KCTD20Q7Z5Y7 419 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 FJX1Q86VR8 437 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 OR13C5Q8NGS8 318 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 RND1Q92730 232 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 PDCD1LG2Q9BQ51 273 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 RNF121Q9H920 327 aa21.92■■□□□ 1.1
SHMT1-207ENST00000580002 H3BSH0 61 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 SGCEO43556 437 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 CNOT4O95628 575 aaKnown RBP21.91■■□□□ 1.1
SHMT1-207ENST00000580002 TACSTD2P09758 323 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 SLC2A1P11166 492 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 KIR3DL2P43630 455 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 CASP6P55212 293 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 CDK5R1Q15078 307 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 NRN1LQ496H8 165 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 PABPC1L2AQ5JQF8 200 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 ELFN2Q5R3F8 820 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 SFRP5Q5T4F7 317 aa21.91■■□□□ 1.1
SHMT1-207ENST00000580002 UFD1Q92890 307 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms