RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 OR8D4Q8NGM9 314 aa20.41■□□□□ 0.86
SHMT1-206ENST00000579558 GTF3AQ92664 365 aaKnown RBP20.41■□□□□ 0.86
SHMT1-206ENST00000579558 SLC7A6OSQ96CW6 309 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-206ENST00000579558 CHODLQ9H9P2 273 aa20.41■□□□□ 0.86
SHMT1-206ENST00000579558 TBC1D23Q9NUY8 699 aa20.41■□□□□ 0.86
SHMT1-206ENST00000579558 IL20Q9NYY1 176 aa20.41■□□□□ 0.86
SHMT1-206ENST00000579558 ABCA2Q9BZC7 2435 aa20.41■□□□□ 0.86
SHMT1-206ENST00000579558 DHRS12A0PJE2 317 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 H3BSA7 217 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 BHLHE40O14503 412 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 RER1O15258 196 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 CST1P01037 141 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 COL8A2P25067 703 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 CCL8P80075 99 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 ZBTB46Q86UZ6 589 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 NPEPL1Q8NDH3 523 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 SLC26A10Q8NG04 563 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 OR1F12Q8NHA8 337 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 CANT1Q8WVQ1 401 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 SLC7A6Q92536 515 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 DGCR6LQ9BY27 220 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 TBCCD1Q9NVR7 557 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 GRIP1Q9Y3R0 1128 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 LHFPL6Q9Y693 200 aa20.4■□□□□ 0.86
SHMT1-206ENST00000579558 LRP5LA4QPB2 252 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 OR6C6A6NF89 314 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 TACSTD2P09758 323 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 GSTM3P21266 225 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 ACHEP22303 614 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 ZNF81P51508 661 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 CHN2P52757 468 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 MRPS11P82912 194 aaKnown RBP20.39■□□□□ 0.85
SHMT1-206ENST00000579558 TEKQ02763 1124 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 TMEM255AQ5JRV8 349 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 GJC3Q8NFK1 279 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 OR10G2Q8NGC3 310 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 YIPF5Q969M3 257 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 TSSK6Q9BXA6 273 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 NKIRAS2Q9NYR9 191 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 ATPIF1Q9UII2 106 aa20.39■□□□□ 0.85
SHMT1-206ENST00000579558 DNHD1Q96M86 4753 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 PLSCR5A0PG75 271 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 TPD52L2O43399 206 aaKnown RBP20.38■□□□□ 0.85
SHMT1-206ENST00000579558 LILRA1O75019 489 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 DNAJC8O75937 253 aaPredicted RBP20.38■□□□□ 0.85
SHMT1-206ENST00000579558 SOX14O95416 240 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 HLA-DQA2P01906 255 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 TFP02787 698 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 GPR6P46095 362 aaPredicted RBP20.38■□□□□ 0.85
SHMT1-206ENST00000579558 FLOT2Q14254 428 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 GK3PQ14409 553 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 TRIP10Q15642 601 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 SLC36A3Q495N2 470 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 CORO6Q6QEF8 472 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 SPATA24Q86W54 205 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 CYB561A3Q8NBI2 242 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 ZNF275Q9NSD4 429 aaPredicted RBP20.38■□□□□ 0.85
SHMT1-206ENST00000579558 DECR2Q9NUI1 292 aa20.38■□□□□ 0.85
SHMT1-206ENST00000579558 GNGT2O14610 69 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 HOXB6P17509 224 aaKnown RBP20.37■□□□□ 0.85
SHMT1-206ENST00000579558 MMP15P51511 669 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 HIST1H3AP68431 136 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 COX10Q12887 443 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 TSTQ16762 297 aaKnown RBP20.37■□□□□ 0.85
SHMT1-206ENST00000579558 HIST2H3PS2Q5TEC6 136 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 HIST2H3AQ71DI3 136 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 LNX2Q8N448 690 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 GIPC3Q8TF64 312 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 MSI2Q96DH6 328 aaKnown RBP20.37■□□□□ 0.85
SHMT1-206ENST00000579558 HDHD2Q9H0R4 259 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 POFUT1Q9H488 388 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 CYSLTR2Q9NS75 346 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 ARMC1Q9NVT9 282 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 BAIAP2Q9UQB8 552 aa20.37■□□□□ 0.85
SHMT1-206ENST00000579558 ANK3Q12955 4377 aaKnown RBP20.36■□□□□ 0.85
SHMT1-206ENST00000579558 LOC100289279A0A1B0GTE1 492 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 SPRY3O43610 288 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 TIMM8AO60220 97 aaPredicted RBP20.36■□□□□ 0.85
SHMT1-206ENST00000579558 CDC14BO60729 498 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 DBHP09172 617 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 TUBG1P23258 451 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 PYCR1P32322 319 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 LIPAP38571 399 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 PRIMA1Q86XR5 153 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 HIPK1Q86Z02 1210 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 LINC00346Q8IVM7 164 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 PROKR2Q8NFJ6 384 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 OR2T4Q8NH00 348 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 OR4Q3Q8NH05 313 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 COG8Q96MW5 612 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 DCLRE1CQ96SD1 692 aaKnown RBP20.36■□□□□ 0.85
SHMT1-206ENST00000579558 COQ7Q99807 217 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 NIPSNAP1Q9BPW8 284 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 CDADC1Q9BWV3 514 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 TUBG2Q9NRH3 451 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 CGGBP1Q9UFW8 167 aaPredicted RBP20.36■□□□□ 0.85
SHMT1-206ENST00000579558 POMPQ9Y244 141 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 STARD10Q9Y365 291 aa20.36■□□□□ 0.85
SHMT1-206ENST00000579558 ZSCAN5BA6NJL1 495 aa20.35■□□□□ 0.85
SHMT1-206ENST00000579558 PPIHO43447 177 aaKnown RBP20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms