RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 LSM6P62312 80 aaKnown RBP9.17□□□□□ -0.94
VPS39-208ENST00000564994 GNGT1P63211 74 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 SPIBQ01892 262 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 CDK5R2Q13319 367 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 KRT72Q14CN4 511 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 KCNMB1Q16558 191 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 MEP1BQ16820 701 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 MTX3Q5HYI7 312 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 SAMD4BQ5PRF9 694 aaKnown RBP9.17□□□□□ -0.94
VPS39-208ENST00000564994 SMARCD3Q6STE5 483 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 ARL9Q6T311 187 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 Q6ZR03 302 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 C1orf229Q6ZS94 237 aaPredicted RBP9.17□□□□□ -0.94
VPS39-208ENST00000564994 ADCK1Q86TW2 530 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 RFLNBQ8N5W9 214 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 OR51F2Q8NH61 342 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 ERMAPQ96PL5 475 aaPredicted RBP9.17□□□□□ -0.94
VPS39-208ENST00000564994 G6PC2Q9NQR9 355 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 CYSLTR2Q9NS75 346 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 PLEK2Q9NYT0 353 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 TAGLN3Q9UI15 199 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 PURGQ9UJV8 347 aaKnown RBP9.17□□□□□ -0.94
VPS39-208ENST00000564994 ZDHHC8Q9ULC8 765 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 GRIP1Q9Y3R0 1128 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 IGLV1-36A0A0B4J1U3 117 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 PLPP2O43688 288 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 IGHV2-5P01817 119 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 ITGA2P17301 1181 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 KITLGP21583 273 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 PCMT1P22061 227 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 FPR3P25089 353 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 RRM2P31350 389 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 HIST1H3AP68431 136 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 RSPO1Q2MKA7 263 aaPredicted RBP9.16□□□□□ -0.94
VPS39-208ENST00000564994 RFX4Q33E94 735 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 HIST2H3PS2Q5TEC6 136 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 ACSM5Q6NUN0 579 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 C1orf94Q6P1W5 598 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 CORO6Q6QEF8 472 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 HIST2H3AQ71DI3 136 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 ZNF771Q7L3S4 317 aaPredicted RBP9.16□□□□□ -0.94
VPS39-208ENST00000564994 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.16□□□□□ -0.94
VPS39-208ENST00000564994 DEFB107AQ8IZN7 70 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 OR6V1Q8N148 313 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 NPEPL1Q8NDH3 523 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 OR1F12Q8NHA8 337 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 FANK1Q8TC84 345 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 CMBLQ96DG6 245 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 SAMD8Q96LT4 415 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 NSMCE2Q96MF7 247 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 NMNAT3Q96T66 252 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 EGLN1Q9GZT9 426 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 OR52D1Q9H346 318 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 METTL17Q9H7H0 456 aaPredicted RBP9.16□□□□□ -0.94
VPS39-208ENST00000564994 SRA1Q9HD15 236 aaKnown RBP9.16□□□□□ -0.94
VPS39-208ENST00000564994 IL1RAPQ9NPH3 570 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 KRCC1Q9NPI7 259 aaPredicted RBP9.16□□□□□ -0.94
VPS39-208ENST00000564994 CGGBP1Q9UFW8 167 aaPredicted RBP9.16□□□□□ -0.94
VPS39-208ENST00000564994 B9D1Q9UPM9 204 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 ARL2BPQ9Y2Y0 163 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 LHFPL6Q9Y693 200 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 DOCK11Q5JSL3 2073 aa9.16□□□□□ -0.94
VPS39-208ENST00000564994 NBEAL1Q6ZS30 2694 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 TRAV20A0A0B4J274 112 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 ARPC3O15145 178 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 TCF21O43680 179 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 OR10H3O60404 316 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 PNPP00491 289 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 FABP3P05413 133 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 HIST1H1CP16403 213 aaKnown RBP9.15□□□□□ -0.94
VPS39-208ENST00000564994 GSTM3P21266 225 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 GSSP48637 474 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 SMIM11AP58511 58 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 TNFAIP6P98066 277 aaPredicted RBP9.15□□□□□ -0.94
VPS39-208ENST00000564994 FAHD2BQ6P2I3 314 aaPredicted RBP9.15□□□□□ -0.94
VPS39-208ENST00000564994 LEG1Q6P5S2 330 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 SLC26A10Q8NG04 563 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 OR4K13Q8NH42 304 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 RAB1CQ92928 201 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 HAVCR1Q96D42 359 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 RAB39BQ96DA2 213 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 FAHD2AQ96GK7 314 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 TIMD4Q96H15 378 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 DIRC2Q96SL1 478 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 TMPRSS13Q9BYE2 586 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 FN3KQ9H479 309 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 METRNQ9UJH8 293 aa9.15□□□□□ -0.94
VPS39-208ENST00000564994 LOC105371242A0A075B767 164 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 OR6C68A6NDL8 312 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 VENTXO95231 258 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 IGHV2-70P01814 119 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 ANPEPP15144 967 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 ATP6V1B2P21281 511 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 TUBG1P23258 451 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 CRABP1P29762 137 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 SLC6A6P31641 620 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 CENPAP49450 140 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 COX10Q12887 443 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 HLXQ14774 488 aaPredicted RBP9.14□□□□□ -0.95
VPS39-208ENST00000564994 ZMAT1Q5H9K5 638 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms