RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 RPS27P42677 84 aaKnown RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 DCAF7P61962 342 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 SCGB2B2Q4G0G5 96 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 TMEM244Q5VVB8 128 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 ZNF813Q6ZN06 617 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 DTWD2Q8NBA8 298 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 TSNAXQ99598 290 aaKnown RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 CMKLR1Q99788 373 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 MRPL22Q9NWU5 206 aaKnown RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 GTF2A1LQ9UNN4 478 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 MRPS18BQ9Y676 258 aaKnown RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 FANCMQ8IYD8 2048 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 CPED1A4D0V7 1026 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 FAM74A7A6NL05 159 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 OR2AT4A6NND4 320 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 C17orf105B2RV13 164 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 F5H0A9 414 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 F8VVB4 439 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 F8VWA3 439 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 H0YIG0 161 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 SLC16A7O60669 478 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 SRSF10O75494 262 aaKnown RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 DXOO77932 396 aaKnown RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 TPT1P13693 172 aaKnown RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 PGCP20142 388 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 HOXA1P49639 335 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 SLC37A1P57057 533 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 PPP1CAP62136 330 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 CXADRP78310 365 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 CTAG1AP78358 180 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 HHEXQ03014 270 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 GLO1Q04760 184 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 EIF2B1Q14232 305 aaKnown RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 KCNAB1Q14722 419 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 TOMM34Q15785 309 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-232ENST00000557487 ACKR1Q16570 336 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 FAM74A3Q4VXF1 159 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 SLC35D2Q76EJ3 337 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 OR13C3Q8NGS6 347 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 FAM46BQ96A09 425 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 ABHD6Q9BV23 337 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 SLC39A1Q9NY26 324 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 MKL2Q9ULH7 1088 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 VSIG4Q9Y279 399 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 MMACHCQ9Y4U1 282 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 LRP12Q9Y561 859 aa14.62□□□□□ -0.07
SHMT2-232ENST00000557487 LRP4O75096 1905 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 TRBV6-7A0A0A0MS04 114 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 DUS4LO95620 317 aaKnown RBP14.61□□□□□ -0.07
SHMT2-232ENST00000557487 MAOBP27338 520 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 MFGE8Q08431 387 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-232ENST00000557487 ZNF260Q3ZCT1 412 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 C10orf91Q5T1B1 145 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 DNM1P34Q6PK57 102 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 LYPD6Q86Y78 171 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 AVL9Q8NBF6 648 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 NARS2Q96I59 477 aaKnown RBP14.61□□□□□ -0.07
SHMT2-232ENST00000557487 ZNF75AQ96N20 296 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 NECAB3Q96P71 396 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-232ENST00000557487 GDF2Q9UK05 429 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-232ENST00000557487 PCDHB10Q9UN67 800 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 FARSAQ9Y285 508 aaKnown RBP14.61□□□□□ -0.07
SHMT2-232ENST00000557487 CARHSP1Q9Y2V2 147 aaKnown RBP14.61□□□□□ -0.07
SHMT2-232ENST00000557487 PRUNE2Q8WUY3 3088 aa14.61□□□□□ -0.07
SHMT2-232ENST00000557487 GPANK1O95872 356 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 GP1BBP13224 206 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 ZNF28P17035 718 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 HSD11B1P28845 292 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 CX3CR1P49238 355 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 ATP1B3P54709 279 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 IL13RA1P78552 427 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 INSM1Q01101 510 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-232ENST00000557487 ERV3-1Q14264 604 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 CDNFQ49AH0 187 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 SPAG16Q8N0X2 631 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 JAGN1Q8N5M9 183 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 ARL11Q969Q4 196 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 MRGPRX1Q96LB2 322 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 NXF5Q9H1B4 397 aaKnown RBP14.6□□□□□ -0.07
SHMT2-232ENST00000557487 TMEM100Q9NV29 134 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 FBLN5Q9UBX5 448 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 FBXO4Q9UKT5 387 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 TEX13DA0A0J9YY54 714 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-232ENST00000557487 A6NIZ1 184 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 H3BSH0 61 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 BPNT1O95861 308 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 CTSBP07858 339 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 POLR2HP52434 150 aaKnown RBP14.6□□□□□ -0.07
SHMT2-232ENST00000557487 RAP1BP61224 184 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 RAP1AP62834 184 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 ZNF117Q03924 483 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 PPP1R1AQ13522 171 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 SHEQ5VZ18 495 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 C3orf33Q6P1S2 294 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 RAB11FIP2Q7L804 512 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 GTPBP8Q8N3Z3 284 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-232ENST00000557487 SLC30A7Q8NEW0 376 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 OR6S1Q8NH40 331 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 RNF141Q8WVD5 230 aa14.6□□□□□ -0.07
SHMT2-232ENST00000557487 PIK3IP1Q96FE7 263 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms