RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ELK1P19419 428 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 CSNK2A2P19784 350 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-209ENST00000553280 RAB4AP20338 218 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 PTNP21246 168 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 WARSP23381 471 aaKnown RBP3.43□□□□□ -1.86
SCFD1-209ENST00000553280 OMGP23515 440 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 CFHR2P36980 270 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 CDKN2BP42772 138 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 CCNG1P51959 295 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 CRISP3P54108 245 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 VSX2P58304 361 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-209ENST00000553280 HERVK_113P61574 105 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 CDH17Q12864 832 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 QPRTQ15274 297 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 POU2AF1Q16633 256 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 RSPO1Q2MKA7 263 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-209ENST00000553280 PTPN20Q4JDL3 420 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 ADNP2Q6IQ32 1131 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 VKORC1L1Q8N0U8 176 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 NPWQ8N729 165 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 FBXO36Q8NEA4 188 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 OR51L1Q8NGJ5 315 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 APH1BQ8WW43 257 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 ISOC2Q96AB3 205 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 WFIKKN1Q96NZ8 548 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 SIKE1Q9BRV8 207 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 TMEM175Q9BSA9 504 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 CALN1Q9BXU9 219 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 PDFQ9HBH1 243 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 CD84Q9UIB8 345 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 CACNG2Q9Y698 323 aa3.43□□□□□ -1.86
SCFD1-209ENST00000553280 BZW2Q9Y6E2 419 aaKnown RBP3.43□□□□□ -1.86
SCFD1-209ENST00000553280 A0A1B0GUA9 196 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 NKX2-6A6NCS4 301 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 SLC22A20A6NK97 555 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 NDUFS8O00217 210 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 NME4O00746 187 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 PLPP1O14494 284 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 ERI3O43414 337 aaKnown RBP3.42□□□□□ -1.86
SCFD1-209ENST00000553280 HPRT1P00492 218 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 ZNF17P17021 662 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 PMCHP20382 165 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 CEACAM6P40199 344 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 SERPINB8P50452 374 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 LHX2P50458 406 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 ZNF138P52744 262 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 ZNF121P58317 390 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-209ENST00000553280 GABRA6Q16445 453 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 WDR82Q6UXN9 313 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 C12orf54Q6X4T0 127 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 ZNF547Q8IVP9 402 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 CSGALNACT2Q8N6G5 542 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 BLOC1S5Q8TDH9 187 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 RPEQ96AT9 228 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 ELSPBP1Q96BH3 223 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 LRRC39Q96DD0 335 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 GALNT14Q96FL9 552 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 RNF185Q96GF1 192 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 PATZ1Q9HBE1 687 aaKnown RBP3.42□□□□□ -1.86
SCFD1-209ENST00000553280 MCUBQ9NWR8 336 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 IFNKQ9P0W0 207 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 PSG8Q9UQ74 426 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 ZNF318Q5VUA4 2279 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 GAKO14976 1311 aa3.42□□□□□ -1.86
SCFD1-209ENST00000553280 MEGF6O75095 1541 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 KDELR3O43731 214 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 SS18L1O75177 396 aaPredicted RBP3.41□□□□□ -1.86
SCFD1-209ENST00000553280 TDP2O95551 362 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 KRTAP1-4P0C5Y4 121 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 GABRR2P28476 465 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 CEACAM3P40198 252 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 CSKP41240 450 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 CXCL5P42830 114 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 CYB561P49447 251 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 YWHAEP62258 255 aaKnown RBP3.41□□□□□ -1.86
SCFD1-209ENST00000553280 C5orf64Q2M2E5 130 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 FAM83EQ2M2I3 478 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 CHRFAM7AQ494W8 412 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 TPRG1LQ5T0D9 272 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 SLC25A25Q6KCM7 469 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 LINC00336Q6ZUF6 198 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 MRPL55Q7Z7F7 128 aaKnown RBP3.41□□□□□ -1.86
SCFD1-209ENST00000553280 ZNF429Q86V71 674 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 HORMAD1Q86X24 394 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 FAM58AQ8N1B3 248 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 TRAM1L1Q8N609 369 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 CHST4Q8NCG5 386 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 OR6Q1Q8NGQ2 317 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 C19orf60Q96EN9 201 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 NRBF2Q96F24 287 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 FAM210BQ96KR6 192 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 GPR21Q99679 349 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 NAA50Q9GZZ1 169 aaKnown RBP3.41□□□□□ -1.86
SCFD1-209ENST00000553280 STMN4Q9H169 189 aaPredicted RBP3.41□□□□□ -1.86
SCFD1-209ENST00000553280 CDC42EP4Q9H3Q1 356 aaKnown RBP3.41□□□□□ -1.86
SCFD1-209ENST00000553280 HAUS4Q9H6D7 363 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 STK38LQ9Y2H1 464 aa3.41□□□□□ -1.86
SCFD1-209ENST00000553280 CARMIL3Q8ND23 1372 aa3.4□□□□□ -1.86
SCFD1-209ENST00000553280 GSTTP1A0A1W2PQM5 241 aa3.4□□□□□ -1.87
SCFD1-209ENST00000553280 A6NDX4 124 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms