RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 MELTFP08582 738 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 RAC2P15153 192 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 TAS2R41P59536 307 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 HNRNPA0Q13151 305 aaKnown RBP14.12□□□□□ -0.15
VPS29-204ENST00000548259 TOP3AQ13472 1001 aaPredicted RBP14.12□□□□□ -0.15
VPS29-204ENST00000548259 ZNF181Q2M3W8 571 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 ZNF404Q494X3 552 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 ALG10Q5BKT4 473 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 PAGE3Q5JUK9 113 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 RBM45Q8IUH3 476 aaKnown RBP14.12□□□□□ -0.15
VPS29-204ENST00000548259 FITM2Q8N6M3 262 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 OR5L1Q8NGL2 311 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 FAM110DQ8TAY7 271 aaPredicted RBP14.12□□□□□ -0.15
VPS29-204ENST00000548259 TMEM239Q8WW34 195 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 MEGF10Q96KG7 1140 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 ZNF582Q96NG8 517 aaPredicted RBP14.12□□□□□ -0.15
VPS29-204ENST00000548259 TMEM246Q9BRR3 403 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 PCGF1Q9BSM1 259 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 POLR2J2Q9GZM3 115 aaKnown RBP14.12□□□□□ -0.15
VPS29-204ENST00000548259 POLR2J3Q9H1A7 115 aaKnown RBP14.12□□□□□ -0.15
VPS29-204ENST00000548259 IKZF5Q9H5V7 419 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 NKIRAS1Q9NYS0 192 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 MED31Q9Y3C7 131 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 USH1CQ9Y6N9 552 aa14.12□□□□□ -0.15
VPS29-204ENST00000548259 TRBV5-3A0A0A0MS03 114 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 IGKV1D-43A0A0B4J1Z2 117 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 TMEM120BA0PK00 339 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 HTR3EA5X5Y0 456 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 A6NIZ1 184 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 TNFRSF13BO14836 293 aaPredicted RBP14.11□□□□□ -0.15
VPS29-204ENST00000548259 SGCEO43556 437 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 DOK2O60496 412 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 ZNF205O95201 554 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 CYB5R3P00387 301 aaPredicted RBP14.11□□□□□ -0.15
VPS29-204ENST00000548259 NPY4RP50391 375 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 RAP1BP61224 184 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 RPL27P61353 136 aaKnown RBP14.11□□□□□ -0.15
VPS29-204ENST00000548259 RAP1AP62834 184 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 KCNJ8Q15842 424 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 GDPGP1Q6ZNW5 385 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 DCDC5Q6ZRR9 648 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 MAVSQ7Z434 540 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 FUNDC1Q8IVP5 155 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 MOSPD2Q8NHP6 518 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 LINC01006Q8NI28 216 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 LIPHQ8WWY8 451 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 LRTOMTQ8WZ04 291 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 DACT3Q96B18 629 aaPredicted RBP14.11□□□□□ -0.15
VPS29-204ENST00000548259 PRSS27Q9BQR3 290 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 CPPED1Q9BRF8 314 aaPredicted RBP14.11□□□□□ -0.15
VPS29-204ENST00000548259 STARD10Q9Y365 291 aa14.11□□□□□ -0.15
VPS29-204ENST00000548259 C5orf63A6NC05 138 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 GPR137BO60478 399 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 RGS6P49758 472 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 WDR4P57081 412 aaKnown RBP14.1□□□□□ -0.15
VPS29-204ENST00000548259 LAPTM4AQ15012 233 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 RUNDC3AQ59EK9 446 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 WDR93Q6P2C0 686 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 EPGNQ6UW88 154 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 FOXL2NBQ6ZUU3 175 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 OR5AS1Q8N127 324 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 OR8G5Q8NG78 346 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 OR11L1Q8NGX0 322 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 PFN4Q8NHR9 129 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 ZNF420Q8TAQ5 688 aaPredicted RBP14.1□□□□□ -0.15
VPS29-204ENST00000548259 RASD2Q96D21 266 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 POLE4Q9NR33 117 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 ACOXLQ9NUZ1 547 aa14.1□□□□□ -0.15
VPS29-204ENST00000548259 C3orf80F5H4A9 247 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 TOX4O94842 621 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 OR5F1O95221 314 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 CSF1P09603 554 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 TSPAN19P0C672 248 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 THRBP10828 461 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 IFNA8P32881 189 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 RBMXP38159 391 aaKnown RBP14.09□□□□□ -0.15
VPS29-204ENST00000548259 PROK1P58294 105 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 ENDOGQ14249 297 aaKnown RBP14.09□□□□□ -0.15
VPS29-204ENST00000548259 AGKQ53H12 422 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 TNFAIP8L3Q5GJ75 292 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 METTL11BQ5VVY1 283 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 WDR25Q64LD2 544 aaPredicted RBP14.09□□□□□ -0.15
VPS29-204ENST00000548259 C1orf94Q6P1W5 598 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 REC114Q7Z4M0 266 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 MOGAT3Q86VF5 341 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 PCYOX1LQ8NBM8 494 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 OR10AD1Q8NGE0 317 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 OR4D11Q8NGI4 311 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 TMEM255BQ8WV15 326 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 TECTBQ96PL2 329 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 DPAGT1Q9H3H5 408 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 RABEP2Q9H5N1 569 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 ERVK-18Q9QC07 812 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 BAG5Q9UL15 447 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 HIF3AQ9Y2N7 669 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 SH3GLB1Q9Y371 365 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 CMYA5Q8N3K9 4069 aa14.09□□□□□ -0.15
VPS29-204ENST00000548259 BTBD17A6NE02 478 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 ZNF879B4DU55 563 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 TSPAN15O95858 294 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms