RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 HTR5AP47898 357 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 PPP1CBP62140 327 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.11□□□□□ -0.47
USP28-209ENST00000540925 MEP1BQ16820 701 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 RSPO1Q2MKA7 263 aaPredicted RBP12.11□□□□□ -0.47
USP28-209ENST00000540925 ZNF718Q3SXZ3 478 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 CLEC12AQ5QGZ9 265 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 SPATA46Q5T0L3 261 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 UNQ6126/PRO20091Q6UXV3 157 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 TMEM179BQ7Z7N9 219 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 JAZF1Q86VZ6 243 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 ABHD4Q8TB40 342 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 ZNRF4Q8WWF5 429 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 YIPF5Q969M3 257 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 LRGUKQ96M69 825 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 RBM4Q9BWF3 364 aaKnown RBP12.11□□□□□ -0.47
USP28-209ENST00000540925 CADM1Q9BY67 442 aaKnown RBP12.11□□□□□ -0.47
USP28-209ENST00000540925 NMNAT2Q9BZQ4 307 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 POFUT1Q9H488 388 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 RERGLQ9H628 205 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 SRA1Q9HD15 236 aaKnown RBP12.11□□□□□ -0.47
USP28-209ENST00000540925 HINT3Q9NQE9 182 aaKnown RBP12.11□□□□□ -0.47
USP28-209ENST00000540925 MRPL22Q9NWU5 206 aaKnown RBP12.11□□□□□ -0.47
USP28-209ENST00000540925 EIF3KQ9UBQ5 218 aaKnown RBP12.11□□□□□ -0.47
USP28-209ENST00000540925 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP28-209ENST00000540925 MXRA5Q9NR99 2828 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 GSC2O15499 205 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 CRLF1O75462 422 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 RENP00797 406 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 GSTM3P21266 225 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 ACHEP22303 614 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 TUBG1P23258 451 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 COL8A2P25067 703 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 MAGEB1P43366 347 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 SELENOVP59797 346 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 GLO1Q04760 184 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 GGTLC2Q14390 218 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 NKPD1Q17RQ9 610 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 PCGF3Q3KNV8 242 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 ALKBH6Q3KRA9 238 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 SLC35F1Q5T1Q4 408 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 SLC18B1Q6NT16 456 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 OR10G2Q8NGC3 310 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 OR52L1Q8NGH7 329 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 OR52E2Q8NGJ4 325 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 OR4Q3Q8NH05 313 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 OR1F12Q8NHA8 337 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 SLC7A6Q92536 515 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 RDH5Q92781 318 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 SLCO4A1Q96BD0 722 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 C1orf159Q96HA4 380 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 FEVQ99581 238 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 NIPSNAP1Q9BPW8 284 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 FN3KQ9H479 309 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 CHODLQ9H9P2 273 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 ELOVL3Q9HB03 270 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 PNRC2Q9NPJ4 139 aaKnown RBP12.1□□□□□ -0.47
USP28-209ENST00000540925 TUBG2Q9NRH3 451 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 PLEK2Q9NYT0 353 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 CYB5R1Q9UHQ9 305 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 GPR160Q9UJ42 338 aa12.1□□□□□ -0.47
USP28-209ENST00000540925 J3QW42 95 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 ABHD16AO95870 558 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 CST1P01037 141 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 DBHP09172 617 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 NOS3P29474 1203 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 PPP2R2BQ00005 443 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 TEKQ02763 1124 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 PSG7Q13046 419 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 FLOT2Q14254 428 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 CARTPTQ16568 116 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 MOGQ16653 247 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 PRIMA1Q86XR5 153 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 SLC37A3Q8NCC5 494 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 ICA1LQ8NDH6 482 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 GJC3Q8NFK1 279 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 DCLRE1CQ96SD1 692 aaKnown RBP12.09□□□□□ -0.47
USP28-209ENST00000540925 COQ7Q99807 217 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 SOX7Q9BT81 388 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 TSSK6Q9BXA6 273 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 HDHD2Q9H0R4 259 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 TBC1D23Q9NUY8 699 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 ARMC1Q9NVT9 282 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 TMEM160Q9NX00 188 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 BAIAP2Q9UQB8 552 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 FBN1P35555 2871 aaKnown RBP12.09□□□□□ -0.47
USP28-209ENST00000540925 MALRD1Q5VYJ5 2156 aa12.09□□□□□ -0.47
USP28-209ENST00000540925 ZSCAN5BA6NJL1 495 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 A8MV72 311 aaPredicted RBP12.08□□□□□ -0.48
USP28-209ENST00000540925 FKBP6O75344 327 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 SOX14O95416 240 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 IGHV1-46P01743 117 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 PSKH1P11801 424 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 KITLGP21583 273 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 GCH1P30793 250 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 IL2RGP31785 369 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 GZMKP49863 264 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 ARHGDIAP52565 204 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 CCL8P80075 99 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 TRIP10Q15642 601 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms