RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CALCBP10092 127 aa15.07■□□□□ 0
USP28-208ENST00000540438 LCN1P31025 176 aa15.07■□□□□ 0
USP28-208ENST00000540438 PRSS3P35030 304 aa15.07■□□□□ 0
USP28-208ENST00000540438 H2BFSP57053 126 aa15.07■□□□□ 0
USP28-208ENST00000540438 SGCAQ16586 387 aa15.07■□□□□ 0
USP28-208ENST00000540438 TEX261Q6UWH6 196 aa15.07■□□□□ 0
USP28-208ENST00000540438 CPEB2Q7Z5Q1 589 aaKnown RBP15.07■□□□□ 0
USP28-208ENST00000540438 PPP1R3BQ86XI6 285 aa15.07■□□□□ 0
USP28-208ENST00000540438 MUC20Q8N307 709 aaPredicted RBP15.07■□□□□ 0
USP28-208ENST00000540438 TNFAIP8L1Q8WVP5 186 aa15.07■□□□□ 0
USP28-208ENST00000540438 ASB10Q8WXI3 467 aa15.07■□□□□ 0
USP28-208ENST00000540438 MAFIPQ8WZ33 124 aa15.07■□□□□ 0
USP28-208ENST00000540438 DNASE2BQ8WZ79 361 aa15.07■□□□□ 0
USP28-208ENST00000540438 CCDC120Q96HB5 630 aa15.07■□□□□ 0
USP28-208ENST00000540438 CHRDQ9H2X0 955 aa15.07■□□□□ 0
USP28-208ENST00000540438 DIABLOQ9NR28 239 aa15.07■□□□□ 0
USP28-208ENST00000540438 U3KQ87 197 aa15.07■□□□□ 0
USP28-208ENST00000540438 U3KQA8 63 aa15.07■□□□□ 0
USP28-208ENST00000540438 MEIKINA0A087WXM9 373 aa15.07■□□□□ 0
USP28-208ENST00000540438 SIGLEC5O15389 551 aa15.07■□□□□ 0
USP28-208ENST00000540438 XRCC3O43542 346 aa15.07■□□□□ 0
USP28-208ENST00000540438 IFI6P09912 130 aa15.07■□□□□ 0
USP28-208ENST00000540438 GALNSP34059 522 aa15.07■□□□□ 0
USP28-208ENST00000540438 GNG2P59768 71 aa15.07■□□□□ 0
USP28-208ENST00000540438 SIGLEC14Q08ET2 396 aa15.07■□□□□ 0
USP28-208ENST00000540438 DYRK1AQ13627 763 aa15.07■□□□□ 0
USP28-208ENST00000540438 ALKAL2Q6UX46 152 aa15.07■□□□□ 0
USP28-208ENST00000540438 POC1BQ8TC44 478 aa15.07■□□□□ 0
USP28-208ENST00000540438 SLAMF6Q96DU3 332 aa15.07■□□□□ 0
USP28-208ENST00000540438 UCN2Q96RP3 112 aa15.07■□□□□ 0
USP28-208ENST00000540438 CNTD2Q9H8S5 307 aa15.07■□□□□ 0
USP28-208ENST00000540438 ITGB1BP2Q9UKP3 347 aa15.07■□□□□ 0
USP28-208ENST00000540438 GSTZ1O43708 216 aaPredicted RBP15.06■□□□□ 0
USP28-208ENST00000540438 PLATP00750 562 aa15.06■□□□□ 0
USP28-208ENST00000540438 AMY2AP04746 511 aa15.06■□□□□ 0
USP28-208ENST00000540438 CD2P06729 351 aa15.06■□□□□ 0
USP28-208ENST00000540438 SLC43A2Q8N370 569 aa15.06■□□□□ 0
USP28-208ENST00000540438 BOLLQ8N9W6 283 aaKnown RBP15.06■□□□□ 0
USP28-208ENST00000540438 OR10S1Q8NGN2 331 aa15.06■□□□□ 0
USP28-208ENST00000540438 RPS4Y2Q8TD47 263 aa15.06■□□□□ 0
USP28-208ENST00000540438 LIN37Q96GY3 246 aaPredicted RBP15.06■□□□□ 0
USP28-208ENST00000540438 NICN1Q9BSH3 213 aa15.06■□□□□ 0
USP28-208ENST00000540438 CKLFQ9UBR5 152 aa15.06■□□□□ 0
USP28-208ENST00000540438 COLQQ9Y215 455 aaPredicted RBP15.06■□□□□ 0
USP28-208ENST00000540438 PTRH2Q9Y3E5 179 aaKnown RBP15.06■□□□□ 0
USP28-208ENST00000540438 FAM25EA8MYX2 175 aa15.06■□□□□ 0
USP28-208ENST00000540438 ICMTO60725 284 aa15.06■□□□□ 0
USP28-208ENST00000540438 MT-ATP6P00846 226 aa15.06■□□□□ 0
USP28-208ENST00000540438 GNB3P16520 340 aa15.06■□□□□ 0
USP28-208ENST00000540438 CXCL2P19875 107 aa15.06■□□□□ 0
USP28-208ENST00000540438 RFC3P40938 356 aa15.06■□□□□ 0
USP28-208ENST00000540438 OR3A3P47888 321 aa15.06■□□□□ 0
USP28-208ENST00000540438 CLRN1P58418 232 aa15.06■□□□□ 0
USP28-208ENST00000540438 ZMYND11Q15326 602 aa15.06■□□□□ 0
USP28-208ENST00000540438 TAF13Q15543 124 aa15.06■□□□□ 0
USP28-208ENST00000540438 CATSPERDQ86XM0 798 aa15.06■□□□□ 0
USP28-208ENST00000540438 ST7LQ8TDW4 575 aa15.06■□□□□ 0
USP28-208ENST00000540438 TMEM234Q8WY98 164 aa15.06■□□□□ 0
USP28-208ENST00000540438 RASL10BQ96S79 203 aa15.06■□□□□ 0
USP28-208ENST00000540438 RAB33BQ9H082 229 aa15.06■□□□□ 0
USP28-208ENST00000540438 HEXA-AS1Q9H8Q6 139 aa15.06■□□□□ 0
USP28-208ENST00000540438 G6PC2Q9NQR9 355 aa15.06■□□□□ 0
USP28-208ENST00000540438 FREM1Q5H8C1 2179 aa15.06■□□□□ 0
USP28-208ENST00000540438 A0A1W2PPC1 479 aa15.06■□□□□ 0
USP28-208ENST00000540438 E9PLN8 166 aa15.06■□□□□ 0
USP28-208ENST00000540438 TO15178 435 aa15.06■□□□□ 0
USP28-208ENST00000540438 OR2T1O43869 369 aa15.06■□□□□ 0
USP28-208ENST00000540438 WDPCPO95876 746 aa15.06■□□□□ 0
USP28-208ENST00000540438 RAB40ALP0C0E4 278 aa15.06■□□□□ 0
USP28-208ENST00000540438 ACSM4P0C7M7 580 aa15.06■□□□□ 0
USP28-208ENST00000540438 PATE4P0C8F1 98 aa15.06■□□□□ 0
USP28-208ENST00000540438 EPHA8P29322 1005 aaPredicted RBP15.06■□□□□ 0
USP28-208ENST00000540438 STARD6P59095 220 aa15.06■□□□□ 0
USP28-208ENST00000540438 ZNF468Q5VIY5 522 aaPredicted RBP15.06■□□□□ 0
USP28-208ENST00000540438 ANKRD16Q6P6B7 361 aa15.06■□□□□ 0
USP28-208ENST00000540438 ABHD12BQ7Z5M8 362 aaPredicted RBP15.06■□□□□ 0
USP28-208ENST00000540438 OR10K1Q8NGX5 313 aa15.06■□□□□ 0
USP28-208ENST00000540438 RAB40AQ8WXH6 277 aa15.06■□□□□ 0
USP28-208ENST00000540438 CHST11Q9NPF2 352 aa15.06■□□□□ 0
USP28-208ENST00000540438 CPAMD8Q8IZJ3 1885 aa15.05■□□□□ 0
USP28-208ENST00000540438 GUSBP08236 651 aa15.05■□□□□ 0
USP28-208ENST00000540438 PI3P19957 117 aa15.05■□□□□ 0
USP28-208ENST00000540438 ZBTB37Q5TC79 503 aa15.05■□□□□ 0
USP28-208ENST00000540438 WDR74Q6RFH5 385 aaPredicted RBP15.05■□□□□ 0
USP28-208ENST00000540438 PLPP5Q8NEB5 264 aa15.05■□□□□ 0
USP28-208ENST00000540438 OR4K17Q8NGC6 315 aa15.05■□□□□ 0
USP28-208ENST00000540438 PIPOXQ9P0Z9 390 aa15.05■□□□□ 0
USP28-208ENST00000540438 B3GAT1Q9P2W7 334 aa15.05■□□□□ 0
USP28-208ENST00000540438 HHLA2Q9UM44 414 aa15.05■□□□□ 0
USP28-208ENST00000540438 F5H5K5 113 aa15.05■□□□□ -0
USP28-208ENST00000540438 CREBL2O60519 120 aaPredicted RBP15.05■□□□□ -0
USP28-208ENST00000540438 RAF1P04049 648 aa15.05■□□□□ -0
USP28-208ENST00000540438 C1QTNF12Q5T7M4 302 aa15.05■□□□□ -0
USP28-208ENST00000540438 IDO2Q6ZQW0 420 aa15.05■□□□□ -0
USP28-208ENST00000540438 DTX1Q86Y01 620 aa15.05■□□□□ -0
USP28-208ENST00000540438 ZNF101Q8IZC7 436 aa15.05■□□□□ -0
USP28-208ENST00000540438 ZNF837Q96EG3 531 aaPredicted RBP15.05■□□□□ -0
USP28-208ENST00000540438 CDX2Q99626 313 aaPredicted RBP15.05■□□□□ -0
USP28-208ENST00000540438 POFUT1Q9H488 388 aa15.05■□□□□ -0
USP28-208ENST00000540438 RANBP3Q9H6Z4 567 aaPredicted RBP15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms