RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 SMYD3Q9H7B4 428 aa-2.6□□□□□ -2.83
RNU6-539P-201ENST00000516665 SYNCQ9H7C4 482 aa-2.6□□□□□ -2.83
RNU6-539P-201ENST00000516665 FAM60AQ9NP50 221 aa-2.6□□□□□ -2.83
RNU6-539P-201ENST00000516665 NARFQ9UHQ1 456 aa-2.6□□□□□ -2.83
RNU6-539P-201ENST00000516665 PLCH2O75038 1416 aa-2.6□□□□□ -2.83
RNU6-539P-201ENST00000516665 TET1Q8NFU7 2136 aa-2.6□□□□□ -2.83
RNU6-539P-201ENST00000516665 TNIKQ9UKE5 1360 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 ASCC3Q8N3C0 2202 aaKnown RBP-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 ZMYM6O95789 1325 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 A0A087WV48 116 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 TRGV3P03979 118 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 RPN1P04843 607 aaKnown RBP-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 CAPN1P07384 714 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 ESDP10768 282 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 CLUP10909 449 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 ATF1P18846 271 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 ELK4P28324 431 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 MPIP34949 423 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 CFHR2P36980 270 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 SUB1P53999 127 aaKnown RBP eCLIP-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 GEMIN4P57678 1058 aaKnown RBP-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 UBE2NP61088 152 aaKnown RBP-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 CDK16Q00536 496 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 CHAF1BQ13112 559 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 G3BP1Q13283 466 aaKnown RBP eCLIP-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 MAPRE1Q15691 268 aaKnown RBP-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 SAMD4BQ5PRF9 694 aaKnown RBP-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 MMS22LQ6ZRQ5 1243 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 BNIPLQ7Z465 357 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 ERO1BQ86YB8 467 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 TMEM126BQ8IUX1 230 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 C1orf158Q8N1D5 194 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 BPIFB6Q8NFQ5 453 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 FXYD5Q96DB9 178 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 SEC22AQ96IW7 307 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 SAMD10Q9BYL1 202 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 ECT2Q9H8V3 914 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 CYP3A43Q9HB55 503 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 MCCC2Q9HCC0 563 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 DYRK4Q9NR20 520 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 HAUS2Q9NVX0 235 aa-2.61□□□□□ -2.83
RNU6-539P-201ENST00000516665 USP42Q9H9J4 1324 aaKnown RBP-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 IGKV1-12A0A0C4DH73 117 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 ANXA2P2A6NMY6 339 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 K7EIL1 84 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 TP53I11O14683 189 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 UPK3AO75631 287 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 IGKV1D-12P01611 117 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 IGF1P05019 195 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 LGALS2P05162 132 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 SFTPBP07988 381 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 CD37P11049 281 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 ANXA3P12429 323 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 AKR1B1P15121 316 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 MAN1A1P33908 653 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 NNMTP40261 264 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 PTGFRP43088 359 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 GSSP48637 474 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 DAP3P51398 398 aaKnown RBP-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 CDKN2DP55273 166 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 WTAPQ15007 396 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 ZBTB6Q15916 424 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 UAP1Q16222 522 aaPredicted RBP-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 TRIM16LQ309B1 348 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 CST9LP1Q5W188 147 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 LRRC74BQ6ZQY2 392 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 APTXQ7Z2E3 356 aaKnown RBP-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 GOLGA7Q7Z5G4 137 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 TMEM144Q7Z5S9 345 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 OR4X2Q8NGF9 303 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 NTAN1Q96AB6 310 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 APOBEC3DQ96AK3 386 aaPredicted RBP-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 MRPS24Q96EL2 167 aaKnown RBP-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 CDKN2AIPNLQ96HQ2 116 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 NDUFAF3Q9BU61 184 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 MS4A8Q9BY19 250 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 RHBGQ9H310 441 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 WDR76Q9H967 626 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 ETNK2Q9NVF9 386 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 MMP17Q9ULZ9 603 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 SNURFQ9Y675 71 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 KDM6BO15054 1643 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 PTPRKQ15262 1439 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 PEAK1Q9H792 1746 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 MSH6P52701 1360 aa-2.62□□□□□ -2.83
RNU6-539P-201ENST00000516665 TRBV6-7A0A0A0MS04 114 aa-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 TOM1L1O75674 476 aa-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 IFITM1P13164 125 aa-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 RAD52P43351 418 aa-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 GPR6P46095 362 aaPredicted RBP-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 EFNA4P52798 201 aa-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 ARF3P61204 181 aaPredicted RBP-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 RPL23P62829 140 aaKnown RBP-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 HERVK_113P63132 956 aa-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 ERVK-8P63133 956 aa-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 ARF1P84077 181 aaKnown RBP-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 CHI3L2Q15782 390 aa-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 ZSWIM7Q19AV6 140 aa-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 FAM133BQ5BKY9 247 aaKnown RBP-2.63□□□□□ -2.83
RNU6-539P-201ENST00000516665 MRPL2Q5T653 305 aaKnown RBP-2.63□□□□□ -2.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms