RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 CLDN1O95832 211 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 EPXP11678 715 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 CRHBPP24387 322 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 HCCSP53701 268 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 ECH1Q13011 328 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 SNTB1Q13884 538 aaKnown RBP18.25■□□□□ 0.51
LSM6-207ENST00000515311 ZNF774Q6NX45 483 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 WFDC8Q8IUA0 241 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 ZNF584Q8IVC4 421 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 AKR7LQ8NHP1 331 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 FAM222BQ8WU58 562 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 RNF133Q8WVZ7 376 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 SLAMF6Q96DU3 332 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 ZC3HAV1LQ96H79 300 aaKnown RBP18.25■□□□□ 0.51
LSM6-207ENST00000515311 SPOCK3Q9BQ16 436 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 RHNO1Q9BSD3 238 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 DDX28Q9NUL7 540 aaKnown RBP18.25■□□□□ 0.51
LSM6-207ENST00000515311 NPAP1Q9NZP6 1156 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 BLOC1S6Q9UL45 172 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 PRR14LQ5THK1 2151 aa18.25■□□□□ 0.51
LSM6-207ENST00000515311 USP9YO00507 2555 aaPredicted RBP18.25■□□□□ 0.51
LSM6-207ENST00000515311 A0A1W2PQL4 384 aaPredicted RBP18.24■□□□□ 0.51
LSM6-207ENST00000515311 ZNF878C9JN71 531 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 CRYGSP22914 178 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 DCKP27707 260 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 ZNF83P51522 516 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 IDH3GP51553 393 aaPredicted RBP18.24■□□□□ 0.51
LSM6-207ENST00000515311 SLC35A2P78381 396 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 RAB39AQ14964 217 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 KCTD18Q6PI47 426 aaPredicted RBP18.24■□□□□ 0.51
LSM6-207ENST00000515311 ZNF540Q8NDQ6 660 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 CPEB3Q8NE35 698 aaKnown RBP18.24■□□□□ 0.51
LSM6-207ENST00000515311 OR10S1Q8NGN2 331 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 OR1F12Q8NHA8 337 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 THEM6Q8WUY1 208 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 IPCEF1Q8WWN9 437 aaPredicted RBP18.24■□□□□ 0.51
LSM6-207ENST00000515311 AMELYQ99218 206 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 COQ7Q99807 217 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 ATF6BQ99941 703 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 YTHDF1Q9BYJ9 559 aaKnown RBP18.24■□□□□ 0.51
LSM6-207ENST00000515311 DUSP21Q9H596 190 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 DIMT1Q9UNQ2 313 aaKnown RBP18.24■□□□□ 0.51
LSM6-207ENST00000515311 COPS3Q9UNS2 423 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 MYRFQ9Y2G1 1151 aa18.24■□□□□ 0.51
LSM6-207ENST00000515311 IGHV1-18A0A0C4DH31 117 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 HTR5AP47898 357 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 ROM1Q03395 351 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 EGR3Q06889 387 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 ST3GAL4Q11206 333 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 ALKBH2Q6NS38 261 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 TMEM154Q6P9G4 183 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 DEGS2Q6QHC5 323 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 TMEM108Q6UXF1 575 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 MEX3BQ6ZN04 569 aaKnown RBP18.23■□□□□ 0.51
LSM6-207ENST00000515311 AHSA2Q719I0 299 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 RFLNBQ8N5W9 214 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 MYDGFQ969H8 173 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 TMEM80Q96HE8 168 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 MS4A3Q96HJ5 214 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 MYCBPQ99417 103 aaPredicted RBP18.23■□□□□ 0.51
LSM6-207ENST00000515311 COPS4Q9BT78 406 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 C1QTNF6Q9BXI9 259 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 CRIM1Q9NZV1 1036 aa18.23■□□□□ 0.51
LSM6-207ENST00000515311 FASNP49327 2511 aaKnown RBP18.23■□□□□ 0.51
LSM6-207ENST00000515311 DAPL1A0PJW8 107 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 CASKO14936 926 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 CELA3BP08861 270 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 CECR9P0C854 216 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 STOMP27105 288 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 APEX1P27695 318 aaKnown RBP18.22■□□□□ 0.51
LSM6-207ENST00000515311 OPRL1P41146 370 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 ZNF322Q6U7Q0 402 aaPredicted RBP18.22■□□□□ 0.51
LSM6-207ENST00000515311 SLC30A7Q8NEW0 376 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 IL17RDQ8NFM7 739 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 OR8B4Q96RC9 309 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 TBX5Q99593 518 aa18.22■□□□□ 0.51
LSM6-207ENST00000515311 PAK1IP1Q9NWT1 392 aaPredicted RBP18.22■□□□□ 0.51
LSM6-207ENST00000515311 UTP20O75691 2785 aaKnown RBP18.22■□□□□ 0.51
LSM6-207ENST00000515311 A1L4Q6 167 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 PTGES3LE9PB15 166 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 M0R1B8 84 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 ZNF254O75437 659 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 MYL12AP19105 171 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 PTAFRP25105 342 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 APLNRP35414 380 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 GDI2P50395 445 aaKnown RBP18.21■□□□□ 0.51
LSM6-207ENST00000515311 GABARAPL2P60520 117 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 GRB2P62993 217 aaKnown RBP18.21■□□□□ 0.51
LSM6-207ENST00000515311 ZNF85Q03923 595 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 TBC1D28Q2M2D7 210 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 KRTAP27-1Q3LI81 207 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 MYPOPQ86VE0 399 aaPredicted RBP18.21■□□□□ 0.51
LSM6-207ENST00000515311 EGFL6Q8IUX8 553 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 STX19Q8N4C7 294 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 OR1J2Q8NGS2 313 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 MRPL48Q96GC5 212 aaKnown RBP18.21■□□□□ 0.51
LSM6-207ENST00000515311 POM121L2Q96KW2 1035 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 ESRP2Q9H6T0 727 aaKnown RBP18.21■□□□□ 0.51
LSM6-207ENST00000515311 CENPMQ9NSP4 180 aa18.21■□□□□ 0.51
LSM6-207ENST00000515311 ERVK13-1Q9NX77 482 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms