RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 LCN2P80188 198 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 SEMG2Q02383 582 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 IFT88Q13099 833 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 LTBP1Q14766 1721 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 TSC22D1Q15714 1073 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 DNAJC24Q6P3W2 148 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 RPEQ96AT9 228 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 CAMTA1Q9Y6Y1 1673 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 MEGF6O75095 1541 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 DENND4AQ7Z401 1863 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 A0A1B0GUH1 482 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 FAM166BA8MTA8 275 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 GABRPO00591 440 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 RDH16O75452 317 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 CA11O75493 328 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 HSBP1O75506 76 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 PCCAP05165 728 aaPredicted RBP4.92□□□□□ -1.62
NUP54-215ENST00000514313 STAG3L2P0CL84 134 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 ATF6P18850 670 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 PMCHP20382 165 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 OMGP23515 440 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 LONP1P36776 959 aaKnown RBP4.92□□□□□ -1.62
NUP54-215ENST00000514313 CFHR2P36980 270 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 RAB7AP51149 207 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 ATP6V0D1P61421 351 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 ADNP2Q6IQ32 1131 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 NPSR1Q6W5P4 371 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 ARRDC1Q8N5I2 433 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 OR10AD1Q8NGE0 317 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 LRRC29Q8WV35 223 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 RAB1CQ92928 201 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 ISOC2Q96AB3 205 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 ZNF317Q96PQ6 595 aaPredicted RBP4.92□□□□□ -1.62
NUP54-215ENST00000514313 DEFB129Q9H1M3 183 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 UVRAGQ9P2Y5 699 aa4.92□□□□□ -1.62
NUP54-215ENST00000514313 NKX2-6A6NCS4 301 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 XRCC2O43543 280 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 TDP2O95551 362 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 NUP62P37198 522 aaPredicted RBP4.91□□□□□ -1.62
NUP54-215ENST00000514313 CCR6P51684 374 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 RCAN2Q14206 197 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 THEM4Q5T1C6 240 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 HES5Q5TA89 166 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 MRPL55Q7Z7F7 128 aaKnown RBP4.91□□□□□ -1.62
NUP54-215ENST00000514313 HORMAD1Q86X24 394 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 VKORC1L1Q8N0U8 176 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 NPWQ8N729 165 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 TMEM104Q8NE00 496 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 OR4A15Q8NGL6 344 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 SEH1LQ96EE3 360 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 DYNLL2Q96FJ2 89 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 NAA50Q9GZZ1 169 aaKnown RBP4.91□□□□□ -1.62
NUP54-215ENST00000514313 LINC00597Q9H2U6 94 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 NEURL4Q96JN8 1562 aa4.91□□□□□ -1.62
NUP54-215ENST00000514313 A0A0J9YYE9 177 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 A6NDN8 102 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 H7C1H1 209 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 NME4O00746 187 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 TRBC1P01850 177 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 KRTAP10-6P60371 365 aaPredicted RBP4.9□□□□□ -1.63
NUP54-215ENST00000514313 PRR3P79522 188 aaKnown RBP4.9□□□□□ -1.63
NUP54-215ENST00000514313 QPRTQ15274 297 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 MPPED2Q15777 294 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 FAM83EQ2M2I3 478 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 HNRNPA1L2Q32P51 320 aaKnown RBP4.9□□□□□ -1.63
NUP54-215ENST00000514313 PLET1Q6UQ28 207 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 FBXW12Q6X9E4 464 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 FAM71AQ8IYT1 594 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 RNF175Q8N4F7 328 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 CHST4Q8NCG5 386 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 GALNT14Q96FL9 552 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 FAM210BQ96KR6 192 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 SLC25A2Q9BXI2 301 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 CD209Q9NNX6 404 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 ZNF331Q9NQX6 463 aaPredicted RBP4.9□□□□□ -1.63
NUP54-215ENST00000514313 MCUBQ9NWR8 336 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 KPTNQ9Y664 436 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 ADGRA3Q8IWK6 1321 aa4.9□□□□□ -1.63
NUP54-215ENST00000514313 TRAV6A0A075B6T7 132 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 SLC22A20A6NK97 555 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 CYSRT1A8MQ03 144 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 H7C417 338 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 PES1O00541 588 aaKnown RBP4.89□□□□□ -1.63
NUP54-215ENST00000514313 HPRT1P00492 218 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 BMI1P35226 326 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 UBE2AP49459 152 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 CYB5R2Q6BCY4 276 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 ZNF433Q8N7K0 673 aaPredicted RBP4.89□□□□□ -1.63
NUP54-215ENST00000514313 SNX31Q8N9S9 440 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 MDS2Q8NDY4 140 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 FBXO36Q8NEA4 188 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 OR5AR1Q8NGP9 310 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 MITD1Q8WV92 249 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 GIMAP1Q8WWP7 306 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 NRBF2Q96F24 287 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 UBE2ZQ9H832 354 aaPredicted RBP4.89□□□□□ -1.63
NUP54-215ENST00000514313 PATZ1Q9HBE1 687 aaKnown RBP4.89□□□□□ -1.63
NUP54-215ENST00000514313 SLC39A1Q9NY26 324 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 ZMAT5Q9UDW3 170 aaKnown RBP4.89□□□□□ -1.63
NUP54-215ENST00000514313 MTFP1Q9UDX5 166 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms